Review round 1 on PR #186:
- The swap test's static note had the same title as the raced note, so
the harness's "inside was read" floor passed without reading r.md
(skipping r.md stayed green). The static note now has its own title.
- An unreadable directory under wiki/ reaches the walk-error path, and
swallowing that error stayed green. New test asserts the error.
- The FIFO test now runs with and without a writer held open.
- _index.md skip had no test; new test.
- index.go: the double blank line left by removing readTitleAndCreated.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
DetectTunnels runs inside every brain_write and brain_update
(wikiUpkeep -> AutoTunnel). It walked wiki/ with filepath.WalkDir and
opened each note with a blocking os.Open: a FIFO named *.md anywhere
under wiki/ hung the write with no deadline, and a symlinked note's
title became a tunnel candidate (171k leaks in the swap race).
It now walks with brainfs.WalkRegular (regular files only) and reads
titles with readTitleAndCreatedIn (ReadRegular: O_NONBLOCK, handle and
SameFile checks). A wiki/ that is not a real directory yields no
candidates, as filepath.WalkDir did; other walk errors still abort. The
path-based readTitleAndCreated, now unused, is removed.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
brain_tunnel accepts only clean wiki/.../*.md paths and reads/rewrites both notes through brainfs; new brainfs.WriteRegular never creates, never writes through a final symlink (Lstat + O_NOFOLLOW|O_NONBLOCK + os.SameFile on the handle, since os.Root follows in-root final symlinks even with O_NOFOLLOW). brain_update resolves like brain_edit (knowledge/ and wiki/ notes only) and reads/rewrites through brainfs. session_log requires a plain-name session id and opens with O_NOFOLLOW|O_NONBLOCK.
Fixes#169. Adversarial review: BLOCKED, BLOCKED, PASS (round 3 by the estate session's reviewer). Follow-ups: #173, #174.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
BuildWingIndex/BuildAllWingIndexes list wings and halls with the new brainfs.ReadDirDirs and ReadDirRegular and read titles with ReadRegular: a symlinked note no longer reaches _index.md, a symlinked wing is refused (nothing written into its target), a symlinked hall is skipped. linkcheck entryIndex walks with WalkRegular, so a symlinked .md cannot make a link resolve, and a linked tree that is not a real directory is skipped with a warning (brain_write still lands).
Refs #157. Adversarial review: BLOCKED, PASS. Follow-up: #178.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
AutoTunnel matched note titles case-insensitively, so a one-word title linked
every entry that happened to use that word. Measured on the live corpus: 185
entries carry an auto-written See-also link to wiki/telos/decisions/wrong.md
(title "WRONG") and 136 to .../status.md — the two most-linked nodes in the
whole graph, and both of them artifacts of the English language rather than
references. telos's projects/problems/strategies/goals/beliefs entries account
for another ~60 between them.
That pollution is not cosmetic: inbound-link count is what the duplicate
Fixer picks survivors by, what orphan detection reads, and what brain_graph
shows.
One-word titles now need the title's own casing in the prose ("WRONG", "BERT",
"NLP" — an entity name in a sentence still links). Multi-word titles keep the
case-insensitive match: "risk tier middleware" is a real mention however it is
capitalised, and a three-word collision is not an accident.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Every brain write accepted [[targets]] that resolve to nothing — skill
names, repo names, agent-local memory-file slugs — and each one became a
permanent [high] broken-link finding. The brain-audit digest grew 19 -> 63
high findings between 2026-08-26 and 2026-09-16; 53 of the 63 were exactly
this, and none are fixable by brain-gardener's BrokenLinkFixer, which only
repoints edit-distance-1 renames. There is no target to repoint to.
StripUnresolvedLinks resolves each link against knowledge/ + wiki/ using
brain-gardener's own resolver semantics (bare slug or wing/hall/slug path
form, code spans excluded) and unwraps the misses to plain text, reporting
them as Ref.Unlinked / the MCP `unlinked` field.
Unwrap rather than reject: a refused write on claudewatcher's unattended
ingest path is a lost learning, and the author's words are worth keeping
even when the link is not. An empty corpus is a no-op, so a misconfigured
brainDir cannot strip every link in a note.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Adds the `brain_tunnel` MCP tool and auto-tunnel behaviour for
`brain_write`, so concepts that appear in multiple wings become
navigable from any of them.
New surface in package brain:
- WriteTunnel(brainDir, src, tgt) — appends a `## See also` bidirectional
wikilink between two notes in different wings. Idempotent (link not
duplicated on re-call) and reuses an existing See also section.
- DetectTunnels(brainDir, content) — walks brain/wiki/, returns
TunnelCandidates for notes whose title appears in content. Tags
whole-word case-insensitive hits as Exact=true and substring-only hits
as Exact=false.
- AutoTunnel(brainDir, src, content) — wraps DetectTunnels: writes
cross-wing exact matches, stages fuzzy matches into
brain/raw/tunnel-candidates-<YYYY-MM-DD>.md for human review.
MCP wiring:
- `brain_tunnel` tool: explicit manual link (source, target).
- `brain_write` with wing+hall now triggers AutoTunnel on the new
content. Failures are logged and never abort the primary write.
readTitleAndCreated also humanises the slug fallback (hyphens → spaces)
so titleless notes participate in content matching.
Closes hyperguild#16.
Tests: idempotency, same-wing rejection, missing-note rejection,
See-also reuse, exact/fuzzy detection, slug fallback, MCP tool happy
path, auto-tunnel hook (cross-wing exact → linked; same-wing → skipped;
fuzzy → candidates file).
Adds a two-dimensional address (wing, hall) to brain notes. A wing is a
topic domain (e.g. jepa-fx, hyperguild); a hall is one of a closed
vocabulary of memory types (facts, decisions, failures, hypotheses,
sources). Notes route to brain/wiki/<wing>/<hall>/<slug>.md with
wing/hall/created_at YAML frontmatter, making the directory a valid
Obsidian vault.
Changes:
- new package ingestion/internal/brain (NotePath, ValidHalls, Sanitise,
BuildWingIndex, BuildAllWingIndexes)
- api.WriteNote refactored to WriteNoteOptions; wing+hall routes to
brain/wiki/, otherwise falls back to brain/knowledge/ (legacy)
- search.Query → QueryOptions with optional Wing/Hall filtering; Result
carries wing/hall extracted from frontmatter or path segments
- MCP tools brain_write and brain_query gain optional wing/hall params
(hall enum-validated); new brain_index tool regenerates _index.md MOC
- POST /index REST endpoint mirrors brain_index
- brain_write auto-rebuilds the wing's _index.md after a wing+hall write
- scripts/migrate-brain-halls.sh migrates flat brain/wiki/{concepts,entities}/
into the new layout (dry-run by default, --commit applies)
All existing tests pass; new tests cover wing/hall write routing, scope
filtering, invalid hall rejection, _index.md generation, and migration
script paths.
Closes hyperguild#1.
mathiasandClaude Opus 5.5