Commit Graph
28 Commits
Author SHA1 Message Date
mathiasandClaude Opus 5.5 fcae16569d fix(brain): provenance keeps only provably plain frontmatter; pipeline stamps
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Round 2 of the PR #147 review forged origin: static for yaml.v3 with an
alias key plus a "..." document-end line: per-line judgement cannot see
context-dependent YAML. It also found REST ingest writing pages with no
provenance (stampPages lived only in the MCP server).

- New package internal/provenance. Apply keeps only top-level groups
  `key: value` with a bare-identifier key whose group decodes on its own
  to exactly that key, drops reserved and duplicate keys and everything
  else (aliases, anchors as keys, document markers, complex/merge keys,
  flow maps, tags, quoted keys), appends the stamp, then decodes the
  whole result with yaml.v3 and refuses the write unless it reads back
  exactly the stamp. api.StampProvenance wraps it and now returns an
  error, which every caller propagates.
- The ingest pipeline stamps every page it writes or merges, from
  provenance.FromContext(ctx); MCP attaches the caller's stamp, REST and
  the watcher stamp unknown. RunRaw takes a ctx.
- brain_edit snapshots the note and rolls the edit back if the stamp
  cannot be verified.

Tests: R1/R2 payloads join the write/update variant table, plus
brain_edit with the alias payload; REST /ingest-raw (title newline
checked with the line-oriented reader) and REST /ingest (stub LLM) stamp
unknown. Two existing byte-exact tests updated for the stamp line.

Refs #145 #144

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-01 22:55:53 +02:00
mathiasandClaude Opus 5.5 e615d6f144 fix(brain): provenance as a post-condition on every model-reachable write
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The PR #147 review forged origin: static as a JWT principal through
three tools the first version never touched (brain_edit, brain_ingest_raw,
ingest_raw + brain_promote), and through YAML spellings a key-name match
missed (quoted, escaped, tagged, flow-mapped, merge keys, lone CR).

- api.StampProvenance removes every spelling of origin/written_by from
  the frontmatter and appends the real values. A line is dropped if
  EITHER yaml.v3 (decoding quotes, escapes, tags, flow maps) or the
  brain's line-oriented readers would read it as provenance; complex
  keys, orphan values and merge keys are dropped outright. Lone CRs in
  frontmatter become LF. Principal values that are not bare words are
  quoted.
- Applied as the last step of writeHallNote, UpdateNote, PromoteNote
  (re-attributed to the promoter), brain_edit (re-attributed to the
  editor) and both ingests (every page written or merged). REST
  /write and /promote carry no principal and stamp unknown.
- Ingest: newlines in scalar fields fold to spaces; a page type must be
  a plain lower-case name (../raw wrote outside wiki/, pre-existing).
- Audit: outcome is ok|error, never the error text, which echoed
  argument values.

Tests: every escape from the review is a table case asserting the
invariant on the file (parses as YAML, yaml.v3 and brain_get agree,
exactly the stamped lines). Plus REST /write, REST capture AuthPath,
body-line provenance in search, and quoted principals; two of the
review's surviving flips now go red. Three tests renamed so names claim
only what they assert.

Refs #145 #144

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-01 22:29:46 +02:00
mathias 9a37881441 feat(pipeline): feed the current source page into the extraction prompt (#106) (#132)
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Co-authored-by: Mathias <mthbqv@gmail.com>
2026-09-23 05:45:47 +00:00
mathiasandClaude Sonnet 5 cdafdf6e0f fix(wiki): surface merge conflicts as textual-diff warnings (closes #104)
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Textual-diff conflict detection only (semantic contradiction detection via brain-gardener Judge deferred, confirmed by Mathias, comment 12594). Includes canonicalBlock whitespace-run normalization fix for the disagreement comparison.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
2026-09-23 05:22:27 +00:00
mathias b340f86a45 feat(pipeline): skip extraction when the source has not changed (#105) (#126)
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Co-authored-by: Mathias <mthbqv@gmail.com>
2026-09-23 05:09:30 +00:00
mathias f450a6c84f feat(pipeline): ingest revises the existing page instead of clobbering it (#103)
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fix(wiki): give the preamble its own field instead of overloading heading=="" (#103)

Round 3 review: verified structurally that the preamble is no longer in the sections slice or the idx map, so it cannot collide with a degenerate `## ` heading. Flip-tested by reverting to the heading=="" model and confirming TestMerge_DegenerateEmptyHeadingDoesNotCollideWithPreamble goes red. Adversarial pass (multiple degenerate headings, frontmatter-only page, unicode around the ## boundary, 3x self-merge idempotency with preamble+degenerate) all held. CI green on 09aeaa9 (run 7820).

Co-authored-by: Mathias <mthbqv@gmail.com>
2026-09-22 21:43:04 +00:00
mathiasandClaude Sonnet 5 6d014c1d0f fix(ingest): CanonicalizeLinks strips wing:/wiki/ prefix and repairs path-style links (#87)
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plainLinkRE matches any [[...]] without a pipe, including path-prefixed
forms like [[wing:homelab/failures/foo]] or [[wiki/agentsquad/decisions/bar]]
that the LLM extraction step occasionally emits. Title-lookup against
titleToSlug always fails for these (they're paths, not titles), so they
were silently left broken.

Before falling to the unknown-wikilink warning, strip a known wing:/wiki/
root prefix and emit the clean wing/hall/slug path directly — matching
the brain-graph path-style link convention.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Roq1ajWKR5f1hG5Df9wC6A
2026-07-27 14:32:31 +02:00
mathiasandClaude Sonnet 5 6ad275b505 fix(ingest): thread source/author/published frontmatter through extraction (#85)
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pipeline.Run parses source/author/published from the raw content's own
frontmatter and applies them deterministically to source-type RawPages
after LLM extraction — never relies on the LLM to copy them through.
buildFrontmatter now emits all three (source pages only) when present.

Backfill of the 46 already-affected wiki/sources/*.md notes is a
separate concern per the issue, not done here.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Roq1ajWKR5f1hG5Df9wC6A
2026-07-26 23:42:33 +02:00
mathiasandClaude Opus 4.6 0a70d9e972 feat(pipeline): add POST /ingest-raw for direct batch ingestion without LLM
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Allows callers to provide pre-structured RawPage data directly, bypassing the
LLM extraction step. The pipeline still handles slug computation, frontmatter,
link canonicalization, source back-references, and dedup — only the extraction
is skipped. Useful when a more capable model or manual curation produces the
structured data.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-24 11:15:59 +02:00
mathiasandClaude Sonnet 4.6 3e9a648115 fix(pipeline): repair invalid JSON escape sequences from LLM output before parsing
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-23 22:04:27 +02:00
mathiasandClaude Sonnet 4.6 923a665365 fix(pipeline): skip RawPages with empty title in BuildPages instead of producing broken paths
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-23 19:55:37 +02:00
mathiasandClaude Sonnet 4.6 537aebc302 feat(pipeline): update system prompt for new LLM JSON contract (no slugs)
- Change prompt to reflect new output format: title, type, subtype, domain, content
- Remove slug/path generation responsibility from LLM — pipeline now handles it
- Wikilinks change from [[slug|Display Name]] to [[Display Name]] only
- LLM no longer includes frontmatter or paths in output

docs(schema): update LLM output format and wikilink convention for Level 3

- Specify JSON schema: title, type, subtype, domain, content fields
- Remove frontmatter requirements from schema output (handled by pipeline)
- Simplify wikilink format to [[Display Name]] — no slug or pipe
- Pipeline now responsible for slug generation and frontmatter construction

These changes shift slug/frontmatter generation from LLM to pipeline,
reducing cognitive load on the model and improving control over output.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-23 19:45:21 +02:00
mathiasandClaude Sonnet 4.6 de35d4dbb0 feat(pipeline): wire ParseRawPages+BuildPages+CanonicalizeLinks into Run
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-23 19:07:33 +02:00
mathias 26855f69b0 feat(pipeline): add CanonicalizeLinks — convert [[Display Name]] to [[slug|Display Name]] 2026-04-23 18:59:10 +02:00
mathias a7b363d589 fix(pipeline): quote YAML scalar fields in buildFrontmatter to prevent injection 2026-04-23 18:56:39 +02:00
mathias 7b57051af8 feat(pipeline): add BuildPages — compute slugs/paths/frontmatter from RawPage 2026-04-23 18:50:37 +02:00
mathiasandClaude Sonnet 4.6 a620f6cb01 fix(pipeline): guard empty-title bridge + skip stale integration tests until task4
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-23 18:46:07 +02:00
mathiasandClaude Sonnet 4.6 26b5636b43 feat(pipeline): replace ParsePages with ParseRawPages + RawPage type
Strips slug authority from the LLM. The new RawPage type carries only
{title, type, subtype, domain, content} — no paths or frontmatter.
Pipeline will derive slugs deterministically (Task 4).

pipeline.go gets a temporary bridge stub (TODO task4) to keep the
package compiling between tasks.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-23 18:41:33 +02:00
mathias 1605624668 feat(pipeline): add POST /backfill-refs endpoint to retroactively inject source back-references 2026-04-23 16:50:00 +02:00
mathias 3c2bd9268c feat(pipeline): wire source back-reference injection into Run 2026-04-23 16:36:22 +02:00
mathias 29727ec2a5 feat(pipeline): inject source back-references into concept and entity pages 2026-04-23 16:35:47 +02:00
mathias 3607920601 fix(lint): resolve all errcheck violations in ingestion module
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2026-04-23 16:20:59 +02:00
mathias 53e46781b1 feat(pipeline): resolve proposed pages against inventory before writing 2026-04-23 16:00:31 +02:00
mathias e9b5cc401c feat(pipeline): add fuzzy entity resolution to prevent slug proliferation 2026-04-23 15:59:36 +02:00
mathiasandClaude Sonnet 4.6 1b0706f270 chore(brain): rename CLAUDE.md to schema.md for clarity
CLAUDE.md has a specific meaning in the Claude Code ecosystem (agent
instructions). The wiki schema for the ingestion pipeline should live
in schema.md to avoid confusion.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-22 23:06:32 +02:00
mathiasandClaude Sonnet 4.6 04fefe8e9c fix(ingestion): wrap naked error returns and harden mustJSON helper
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-22 22:51:19 +02:00
mathiasandClaude Sonnet 4.6 103f4d90bf feat(ingestion): add pipeline orchestrator with prompt builder
Adds prompt.go (BuildPrompt + systemPrompt) and pipeline.go (Run, Config,
Result, mergeAll) that wire chunking, LLM calls, parse, merge, index rebuild,
and log append into a single ingestion pipeline. Includes integration tests
covering write, dry-run, and duplicate-path merge scenarios.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-22 22:45:19 +02:00
mathias 9b11719481 feat(ingestion): add content chunking and LLM JSON output parser 2026-04-22 22:37:14 +02:00