4 Commits

Include renames

Author	SHA1	Message	Date
mathiasandClaude Opus 5.5	c7a6429bae	fix(graph,wiki): read the brain through brainfs (#157, slice 4) ... graphsync.IndexDoc/BackfillFromBrainDir and wiki.LoadInventory/ RebuildIndex read notes by path (os.ReadFile, os.Open, os.ReadDir + open). A symlinked note put the target's title, aliases and wikilinks into the knowledge graph, the wiki inventory (and the LLM prompts built from it) and wiki/index.md; a FIFO hung each read. - graphsync: IndexDoc and the backfill read through brainfs; the backfill walks with WalkRegular, skips a missing root and aborts on any other walk error, including a symlinked root. - wiki: LoadInventory lists type dirs with the new brainfs.ReadDirRegular (every component a real dir, regular files only) and reads frontmatter through the root; a symlinked type dir is an error. RebuildIndex reads first sentences through the root. - brainfstest's outside file now carries the sentinel in frontmatter title and aliases, a heading and a wikilink, so extractors that ignore the body are tested too. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>	2026-10-04 22:17:44 +02:00
mathiasandClaude Opus 5.5	57d0fb0fae	fix(vectorstore): walk and read the brain through brainfs (#157, slice 3) (#166) ... vectorstore.Sync walks and reads via brainfs (regular files only, handle-checked), so symlinked notes are no longer embedded and their old chunks are purged. brainfs.WalkRegular requires every component of its root to be a real directory (fixes in-brain root aliasing in Sync and search Wing/Wing+Hall). Walk errors, including a symlinked scan root, abort Sync before the delete pass. brainfs gains Lstat. Directory-swap race recorded as accepted residual (#167). Refs #157. Adversarial review: BLOCKED, BLOCKED, PASS. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: Mathias <mthbqv@gmail.com>	2026-10-04 06:35:17 +00:00
mathiasandClaude Opus 5.5	27a01dd2af	fix(brain): context, brain_get and brain_read read through brainfs (#157, slice 2) (#165) ... readExcerpt, ReadNote and ReadScoped now read through brainfs (os.Root, regular files only, type checked on the opened handle), so a symlink swapped in after a check is not followed and a FIFO does not hang the reader. ReadRegularMax bounds the read itself with io.LimitReader(max+1). notes.Target carries the brain root. Refs #157. Adversarial review round 2: PASS (round 1 BLOCKED: unbounded read, rule-9 test names). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: Mathias <mthbqv@gmail.com>	2026-10-04 05:59:55 +00:00
mathias	eb77305580	fix(search): walk and read the brain through an os.Root (#157, slice 1) (#161) ... Co-authored-by: Mathias <mthbqv@gmail.com>	2026-10-03 19:34:46 +00:00