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Author SHA1 Message Date
mathias ce365eee44 feat(pipeline): skip extraction when the source has not changed (#105)
Ingest now stamps source_hash — sha256 of the ingested body, frontmatter
excluded — onto the source page, and compares it before doing any work. An
unchanged source returns Skipped with no LLM call at all.

This is cost and signal, not correctness: #103 already made a re-ingest
byte-identical, so a repeated run was harmless but not free — a full
extraction over every chunk to produce a result that merges to nothing.
Building this first would have put idempotency in the guard rather than in
the write, which is the wrong dependency direction.

Body-only hashing on purpose. A re-crawl that stamps a new fetch date has
not changed the source, and treating that as drift would re-extract the
whole corpus every time a crawler ran. A missing or unreadable hash always
means "extract": a missed skip costs one extraction, a wrong skip loses an
update silently, and silence is the failure mode this repo keeps paying
for.

The skip is reported (Result.Skipped plus a warning naming the hash), not
silent — a run that does nothing must say so, or "the pipeline is fine" and
"the pipeline stopped working" look identical (#107).

Storing the hash required settling who owns which frontmatter field. #103
made the on-disk block win wholesale, which protects human-set metadata
from a regenerating writer but froze fields the generator legitimately
owns. wiki.Merge now refreshes an explicit generatorOwned allowlist —
last_updated and source_hash — and keeps everything else on disk. An
allowlist rather than a carve-out, so a field nobody has thought about
stays human-owned by default. That also retires the last_updated
limitation #103 shipped with.

Refs #105, #103, #107, brain#21.
2026-08-22 16:15:56 +02:00
7 changed files with 256 additions and 134 deletions
+15 -2
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@@ -100,8 +100,21 @@ review gate.
Re-ingesting unchanged content is **byte-identical** — no diff, so brain-sync
does not commit noise that hides real edits.
Known limitation: because the on-disk frontmatter wins, `last_updated` keeps its
first-ingest date on a revised page.
Two fields are **generator-owned** and do get refreshed on a revise:
`last_updated` and `source_hash`. Everything else on disk wins. The boundary is
an explicit allowlist, so a field nobody has thought about stays human-owned.
## Re-ingesting an unchanged source is skipped
Ingest stores `source_hash` — sha256 of the ingested **body**, frontmatter
excluded — on the source page. A later ingest of the same source compares it
first and skips extraction entirely when it matches, reporting the skip rather
than doing it silently.
Body-only is deliberate: a re-crawl that stamps a new fetch date has not changed
the source, and treating that as drift would re-extract the corpus every time a
crawler ran. A missing or unreadable hash always means "extract" — a missed skip
costs one extraction, a wrong skip loses an update.
## Phase 1 tools (available now)
+3
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@@ -76,6 +76,9 @@ func buildFrontmatter(rp RawPage, date string) string {
}
fmt.Fprintf(&sb, "date_ingested: %s\n", date)
fmt.Fprintf(&sb, "last_updated: %s\n", date)
if rp.SourceHash != "" {
fmt.Fprintf(&sb, "source_hash: %s\n", rp.SourceHash)
}
if rp.Source != "" {
fmt.Fprintf(&sb, "source: %s\n", yamlScalar(rp.Source))
}
+10
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@@ -20,6 +20,10 @@ type RawPage struct {
// ingested content's own frontmatter (see parseContentFrontmatter) — never
// set by the LLM. json:"-" keeps them immune to same-named keys the LLM
// might emit. Only meaningful for Type == "source".
// SourceHash is sha256 of the ingested BODY (frontmatter excluded), stamped
// so the next ingest of the same source can tell "unchanged" from "edited"
// without re-running extraction (#105).
SourceHash string `json:"-"`
Source string `json:"-"`
Author string `json:"-"`
Published string `json:"-"`
@@ -112,6 +116,11 @@ type sourceMeta struct {
Source string
Author string
Published string
// BodyHash is sha256 of the content with any leading frontmatter removed.
// Body-only on purpose: a re-crawl that stamps a new fetch date has not
// changed the source, and treating that as drift would re-extract the
// whole corpus every time a crawler ran (#105).
BodyHash string
}
// parseContentFrontmatter extracts source/author/published from a leading
@@ -154,6 +163,7 @@ func applySourceMeta(pages []RawPage, meta sourceMeta) {
if pages[i].Type != "source" {
continue
}
pages[i].SourceHash = meta.BodyHash
pages[i].Source = meta.Source
pages[i].Author = meta.Author
pages[i].Published = meta.Published
+61 -1
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@@ -3,6 +3,8 @@ package pipeline
import (
"context"
"crypto/sha256"
"encoding/hex"
"fmt"
"os"
"path/filepath"
@@ -26,6 +28,11 @@ type Config struct {
type Result struct {
Pages []string // relative paths written (or would-be written in dry-run)
Warnings []string
// Skipped reports that the source was byte-identical to the last ingest,
// so no extraction ran and nothing was written. Reported rather than
// silent: a run that does nothing must say so, or "the pipeline is fine"
// and "the pipeline stopped working" look the same (#105, #107).
Skipped bool
}
// Run ingests content and writes structured wiki pages to brainDir/wiki/.
@@ -43,6 +50,18 @@ func Run(ctx context.Context, cfg Config, brainDir, content, source string, dryR
sourceSlug := wiki.Slug(source)
date := time.Now().UTC().Format("2006-01-02")
// Drift check BEFORE any extraction: an unchanged source costs a full LLM
// pass over every chunk to produce a result that merges to nothing (#105).
// The merge is already idempotent (#103), so this is cost and signal, not
// correctness — which is why it is safe for it to be an early return.
bodyHash := hashBody(content)
if !dryRun && bodyHash != "" && bodyHash == storedSourceHash(brainDir, sourceSlug) {
return Result{Skipped: true, Warnings: []string{
fmt.Sprintf("source %q unchanged since last ingest (hash %s) — extraction skipped", source, bodyHash[:12]),
}}, nil
}
chunks := Chunk(content, cfg.ChunkSize)
var allRaw []RawPage
@@ -59,7 +78,9 @@ func Run(ctx context.Context, cfg Config, brainDir, content, source string, dryR
allWarnings = append(allWarnings, warnings...)
}
applySourceMeta(allRaw, parseContentFrontmatter(content))
meta := parseContentFrontmatter(content)
meta.BodyHash = bodyHash
applySourceMeta(allRaw, meta)
return buildAndWrite(allRaw, sourceSlug, date, brainDir, source, inventory, allWarnings, dryRun)
}
@@ -119,6 +140,45 @@ func buildAndWrite(rawPages []RawPage, sourceSlug, date, brainDir, source string
return Result{Pages: written, Warnings: warnings}, nil
}
// hashBody returns sha256 of content with any leading frontmatter block
// removed, or "" for empty content.
//
// Body-only on purpose: a re-crawl that stamps a new fetch date has not changed
// the source, and treating that as drift would re-extract the corpus every time
// a crawler ran (#105).
func hashBody(content string) string {
body := content
if strings.HasPrefix(body, "---\n") {
if _, rest, found := strings.Cut(body[4:], "\n---"); found {
body = strings.TrimPrefix(rest, "\n")
}
}
if strings.TrimSpace(body) == "" {
return ""
}
sum := sha256.Sum256([]byte(body))
return hex.EncodeToString(sum[:])
}
// storedSourceHash reads source_hash from the source page a previous ingest
// wrote, or "" when there is no such page or no such field.
//
// Absence always means "extract". That is the fail-safe direction: a missed
// skip costs one extraction, while a wrong skip loses an update silently — and
// silence is the failure mode this repo keeps paying for.
func storedSourceHash(brainDir, sourceSlug string) string {
raw, err := os.ReadFile(filepath.Join(brainDir, "wiki", "sources", sourceSlug+".md"))
if err != nil {
return ""
}
for _, line := range strings.Split(string(raw), "\n") {
if key, value, found := strings.Cut(line, ":"); found && strings.TrimSpace(key) == "source_hash" {
return strings.TrimSpace(value)
}
}
return ""
}
// reviseOrCreate returns the bytes to write for one extracted page: merged into
// whatever is already on disk, or the page as-is when the path is new.
//
@@ -233,3 +233,63 @@ func TestRunRaw_ReIngestingUnchangedContentIsByteIdentical(t *testing.T) {
assert.Equal(t, string(first), string(second),
"re-ingesting unchanged content must leave the page byte-identical")
}
// --- #105: source drift — an unchanged re-ingest must not re-extract --------
func TestRun_SkipsExtractionWhenTheSourceIsUnchanged(t *testing.T) {
// #103 made a re-ingest harmless (byte-identical merge). It is still not
// free: the full LLM extraction runs over every chunk to produce a result
// that merges to nothing. This is the cost half.
dir := t.TempDir()
var calls int
cfg := Config{Complete: func(_ context.Context, _, _ string) (string, error) {
calls++
return `[{"title":"Shape Up","type":"source","subtype":"book","domain":"product","content":"## Summary\n\nA book.\n"}]`, nil
}}
content := "---\nsource: https://example.com/shape-up\n---\n\nThe body of the article.\n"
first, err := Run(context.Background(), cfg, dir, content, "shape-up", false)
require.NoError(t, err)
require.Equal(t, 1, calls, "first ingest must extract")
assert.False(t, first.Skipped)
second, err := Run(context.Background(), cfg, dir, content, "shape-up", false)
require.NoError(t, err)
assert.Equal(t, 1, calls, "unchanged content must not be extracted again")
assert.True(t, second.Skipped, "the skip must be reported, not silent")
}
func TestRun_ReExtractsWhenTheSourceBodyChanged(t *testing.T) {
dir := t.TempDir()
var calls int
cfg := Config{Complete: func(_ context.Context, _, _ string) (string, error) {
calls++
return `[{"title":"Shape Up","type":"source","subtype":"book","domain":"product","content":"## Summary\n\nA book.\n"}]`, nil
}}
_, err := Run(context.Background(), cfg, dir, "---\nsource: x\n---\n\nversion one\n", "shape-up", false)
require.NoError(t, err)
_, err = Run(context.Background(), cfg, dir, "---\nsource: x\n---\n\nversion two — the source was edited\n", "shape-up", false)
require.NoError(t, err)
assert.Equal(t, 2, calls, "changed content must be re-extracted")
}
func TestRun_FrontmatterOnlyChangeIsNotDrift(t *testing.T) {
// The hash covers the body, so re-fetching a page whose metadata moved
// (a re-crawl stamping a new date) is not treated as the source changing.
dir := t.TempDir()
var calls int
cfg := Config{Complete: func(_ context.Context, _, _ string) (string, error) {
calls++
return `[{"title":"Shape Up","type":"source","subtype":"book","domain":"product","content":"## Summary\n\nA book.\n"}]`, nil
}}
_, err := Run(context.Background(), cfg, dir, "---\nsource: x\nfetched: monday\n---\n\nsame body\n", "shape-up", false)
require.NoError(t, err)
_, err = Run(context.Background(), cfg, dir, "---\nsource: x\nfetched: tuesday\n---\n\nsame body\n", "shape-up", false)
require.NoError(t, err)
assert.Equal(t, 1, calls, "only the body counts as the source")
}
+64 -57
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@@ -29,16 +29,12 @@ type section struct {
}
// Merge combines two Page values with the same path.
// Frontmatter is taken from a. The preamble (content before the first ##
// heading) is taken from a — same "on-disk wins" default every unlisted
// named section gets, kept as a separate field rather than a section with
// an empty heading so it can never collide with one (see parseSections).
// Sections are merged by strategy: bullet sections union unique lines,
// append sections concatenate, all others keep a's version. Sections in b
// not present in a are appended.
// Frontmatter is taken from a. Sections are merged by strategy:
// bullet sections union unique lines, append sections concatenate,
// all others keep a's version. Sections in b not present in a are appended.
func Merge(a, b Page) Page {
fmA, preambleA, secsA := parseSections(a.Content)
_, _, secsB := parseSections(b.Content)
fmA, secsA := parseSections(a.Content)
fmB, secsB := parseSections(b.Content)
idx := make(map[string]int, len(secsA))
for i, s := range secsA {
@@ -61,20 +57,59 @@ func Merge(a, b Page) Page {
}
}
return Page{Path: a.Path, Content: rebuildContent(fmA, preambleA, secsA)}
return Page{Path: a.Path, Content: rebuildContent(refreshOwned(fmA, fmB), secsA)}
}
// parseSections splits markdown into its frontmatter, its preamble (content
// before the first `## ` heading), and its `## `-headed sections.
// generatorOwned names the frontmatter fields the ingest pipeline may refresh
// on a page it is revising. Everything else on disk wins.
//
// The preamble is returned separately rather than as a section with an
// empty heading — a section keyed by heading=="" would collide with a
// literal degenerate `## ` (marker, no title text; strings.TrimPrefix also
// yields ""), which is a distinct, addressable section a page can genuinely
// have, not the same thing as "no heading yet." Two entries sharing one key
// in Merge's idx map means one of them silently loses lookup visibility —
// found in review as real, reproducible data loss, not a hypothetical.
func parseSections(markdown string) (frontmatter, preamble string, sections []section) {
// #103 made the on-disk frontmatter win wholesale, which is what stops a
// regenerating writer from overwriting human-set metadata — a title someone
// fixed, or the claim-property envelope (brain#21). The cost was that fields
// the generator legitimately owns froze at their first-ingest values: when it
// last ran, and what it last saw.
//
// An explicit allowlist rather than a carve-out: the ownership boundary is
// nameable, and a field nobody has thought about stays human-owned by default,
// which is the safe direction.
var generatorOwned = map[string]bool{
"last_updated": true,
"source_hash": true,
}
// refreshOwned returns a's frontmatter with the generator-owned fields taken
// from b where b supplies them. Fields absent from b keep a's value, so a
// generator that stops emitting a field cannot blank it.
func refreshOwned(a, b string) string {
bVals := make(map[string]string)
for _, line := range strings.Split(b, "\n") {
key, value, found := strings.Cut(line, ":")
if !found || !generatorOwned[strings.TrimSpace(key)] {
continue
}
bVals[strings.TrimSpace(key)] = strings.TrimSpace(value)
}
if len(bVals) == 0 {
return a
}
out := make([]string, 0, len(strings.Split(a, "\n")))
for _, line := range strings.Split(a, "\n") {
key, _, found := strings.Cut(line, ":")
k := strings.TrimSpace(key)
if found && generatorOwned[k] {
if v, ok := bVals[k]; ok {
out = append(out, k+": "+v)
delete(bVals, k)
continue
}
}
out = append(out, line)
}
return strings.Join(out, "\n")
}
func parseSections(markdown string) (frontmatter string, sections []section) {
lines := strings.Split(markdown, "\n")
i := 0
@@ -92,22 +127,6 @@ func parseSections(markdown string) (frontmatter, preamble string, sections []se
frontmatter = fmt.Sprintf("---\n%s\n---\n", strings.Join(fmLines, "\n"))
}
// Everything before the first `## ` heading — an intro paragraph, or, if
// the page has no headings at all, the entire body — is ordinary content,
// not something this parser is entitled to drop (hyperguild#103 review:
// dropping it meant Merge, one caller up, would silently replace the
// whole on-disk body with the fresh extraction whenever a page didn't
// follow the ## convention — exactly the class of bug this file exists
// to prevent).
var preambleLines []string
for ; i < len(lines); i++ {
if strings.HasPrefix(lines[i], "## ") {
break
}
preambleLines = append(preambleLines, lines[i])
}
preamble = strings.Join(preambleLines, "\n")
var cur *section
for ; i < len(lines); i++ {
line := lines[i]
@@ -134,12 +153,9 @@ func parseSections(markdown string) (frontmatter, preamble string, sections []se
// by a blank line — invisible in a diff viewer, fatal to byte-stability. Compile-on-ingest
// merges on every run, so "merging changes nothing when nothing changed" has to
// hold at the byte level, not just the content level.
func rebuildContent(frontmatter, preamble string, sections []section) string {
func rebuildContent(frontmatter string, sections []section) string {
var sb strings.Builder
sb.WriteString(frontmatter)
if body := strings.Trim(preamble, "\n"); body != "" {
fmt.Fprintf(&sb, "\n%s\n", body)
}
for _, sec := range sections {
body := strings.Trim(sec.content, "\n")
fmt.Fprintf(&sb, "\n## %s\n\n%s\n", sec.heading, body)
@@ -147,15 +163,6 @@ func rebuildContent(frontmatter, preamble string, sections []section) string {
return sb.String()
}
// canonicalLine collapses a line to its comparison key: internal whitespace
// runs (a re-extraction's bullet spacing, tabs vs spaces, trailing spaces)
// must not make the same logical line look new. strings.Fields already
// trims and splits on any whitespace run, so joining it back with single
// spaces is exactly "same words, same order, whitespace-insensitive."
func canonicalLine(line string) string {
return strings.Join(strings.Fields(line), " ")
}
// appendNew concatenates the lines of b that a does not already carry.
//
// Append sections used to concatenate wholesale, which is correct exactly once.
@@ -176,18 +183,18 @@ func canonicalLine(line string) string {
func appendNew(a, b string) string {
seen := make(map[string]bool)
for _, line := range strings.Split(a, "\n") {
if c := canonicalLine(line); c != "" {
seen[c] = true
if t := strings.TrimSpace(line); t != "" {
seen[t] = true
}
}
var add []string
for _, line := range strings.Split(b, "\n") {
c := canonicalLine(line)
if c == "" || seen[c] {
t := strings.TrimSpace(line)
if t == "" || seen[t] {
continue
}
seen[c] = true
seen[t] = true
add = append(add, line)
}
if len(add) == 0 {
@@ -200,11 +207,11 @@ func mergeBullets(a, b string) string {
seen := make(map[string]bool)
var lines []string
for _, line := range strings.Split(a+b, "\n") {
c := canonicalLine(line)
if c == "" || seen[c] {
trimmed := strings.TrimSpace(line)
if trimmed == "" || seen[trimmed] {
continue
}
seen[c] = true
seen[trimmed] = true
lines = append(lines, line)
}
return strings.Join(lines, "\n") + "\n"
+40 -71
View File
@@ -54,77 +54,6 @@ func TestMerge_KeepsFrontmatterFromA(t *testing.T) {
assert.NotContains(t, got.Content, "title: B")
}
// --- hyperguild#103 review: a page with content outside any `## ` section ---
// must never lose that content on merge. parseSections used to only capture
// text between `## ` headings — anything before the first heading (a common,
// ordinary shape for a hand-written note: an intro paragraph before the first
// section) or, worse, an entire page with no `## ` headings at all (a legacy
// note, a stub, any hand-edit that doesn't follow the section convention)
// vanished silently. Merge would then fill the page entirely from the fresh
// extraction — the opposite of "never silently rewrite what a human put
// there," the guarantee this whole file exists to provide.
func TestMerge_PreservesOnDiskContentWithNoSectionHeadings(t *testing.T) {
a := Page{Path: "wiki/x.md", Content: "---\ntitle: X\n---\n\nJust some free text a human wrote. No section headings at all.\n"}
b := Page{Path: "wiki/x.md", Content: "---\ntitle: X\n---\n\n## Definition\n\nFresh extraction's take.\n"}
got := Merge(a, b)
assert.Contains(t, got.Content, "Just some free text a human wrote",
"on-disk content with no ## headings must survive the merge, not be replaced wholesale by the fresh extraction")
}
func TestMerge_DegenerateEmptyHeadingDoesNotCollideWithPreamble(t *testing.T) {
// Second review pass on #103: representing the preamble as a section with
// heading=="" collides with a literal `## ` (marker, no title text) —
// strings.TrimPrefix("## ", "## ") is also "". `a` has only a preamble
// (no degenerate heading of its own); `b` introduces a genuinely new
// degenerate `## ` section. Because both key to "", Merge's idx thinks
// b's section "already exists" in a (it's really just a's unrelated
// preamble) and never adds it — b's section vanishes from the output
// entirely, not merged, not kept, not appended.
a := Page{Path: "p.md", Content: "---\ntitle: X\n---\n\nAn intro paragraph.\n\n## Definition\n\nA thing.\n"}
b := Page{Path: "p.md", Content: "---\ntitle: X\n---\n\n## \n\nA genuinely new degenerate section's body.\n\n## Definition\n\nA thing.\n"}
got := Merge(a, b)
assert.Contains(t, got.Content, "An intro paragraph.", "a's own preamble must survive")
assert.Contains(t, got.Content, "A genuinely new degenerate section's body.",
"b's degenerate section is new content, not a collision with a's unrelated preamble — it must not be silently dropped")
}
func TestMerge_PreservesPreambleBeforeFirstHeading(t *testing.T) {
a := Page{Path: "wiki/x.md", Content: "---\ntitle: X\n---\n\nAn intro paragraph before the first heading.\n\n## Definition\n\nA thing.\n"}
b := Page{Path: "wiki/x.md", Content: "---\ntitle: X\n---\n\n## Definition\n\nA thing.\n"}
got := Merge(a, b)
assert.Contains(t, got.Content, "An intro paragraph before the first heading",
"text before the first ## heading is ordinary page content, not something the parser is entitled to drop")
}
// --- hyperguild#103 review: dedup must be whitespace-insensitive -----------
// Page content is produced by an LLM per run, so byte-identical re-extraction
// of "the same" logical line is not guaranteed — different bullet spacing or
// trailing whitespace on an otherwise-identical line must still dedup, or
// idempotency only holds when the extractor happens to reproduce whitespace
// exactly, which is not a real guarantee.
func TestMerge_AppendSectionDedupsAcrossWhitespaceVariants(t *testing.T) {
a := Page{Path: "p.md", Content: "---\ntitle: X\n---\n\n## Open Questions\n\n- Does this converge?\n"}
b := Page{Path: "p.md", Content: "---\ntitle: X\n---\n\n## Open Questions\n\n- Does this converge? \n"}
got := Merge(a, b)
assert.Equal(t, 1, strings.Count(got.Content, "Does this converge?"),
"same logical line with different whitespace must dedup, not duplicate")
}
func TestMerge_BulletSectionDedupsAcrossWhitespaceVariants(t *testing.T) {
a := Page{Path: "p.md", Content: "---\ntitle: X\n---\n\n## Related Concepts\n\n- [[bar|Bar]]\n"}
b := Page{Path: "p.md", Content: "---\ntitle: X\n---\n\n## Related Concepts\n\n- [[bar|Bar]]\n"}
got := Merge(a, b)
assert.Equal(t, 1, strings.Count(got.Content, "[[bar|Bar]]"),
"same logical bullet with different whitespace must dedup, not duplicate")
}
// --- brain#21/B1: merging must be safe to run again -------------------------
func TestMerge_AppendSectionDoesNotDuplicateContentAlreadyPresent(t *testing.T) {
@@ -174,3 +103,43 @@ title: X
assert.Contains(t, got, "Does this converge?", "existing question must survive")
assert.Contains(t, got, "What happens under load?", "new question must be added")
}
func TestMerge_GeneratorOwnedFrontmatterFieldsAreRefreshed(t *testing.T) {
// #103 made on-disk frontmatter win wholesale, which is what protects
// human-set fields from a regenerating writer. The cost was that fields the
// generator legitimately owns — when it last ran, what it last saw — froze
// at their first-ingest values. An explicit owned-set is the boundary:
// named fields the generator may refresh, everything else human-owned.
existing := Page{Path: "wiki/sources/x.md", Content: `---
title: 'X'
last_updated: 2026-01-01
source_hash: aaaa
half_life: durable
claim_provenance: asserted
---
## Summary
Original.
`}
fresh := Page{Path: "wiki/sources/x.md", Content: `---
title: 'Renamed by the model'
last_updated: 2026-08-22
source_hash: bbbb
---
## Summary
Rewritten by the model.
`}
got := Merge(existing, fresh).Content
assert.Contains(t, got, "last_updated: 2026-08-22", "generator owns last_updated")
assert.Contains(t, got, "source_hash: bbbb", "generator owns source_hash")
assert.Contains(t, got, "title: 'X'", "a human-set title must survive regeneration")
assert.Contains(t, got, "half_life: durable", "the claim envelope must survive regeneration")
assert.Contains(t, got, "claim_provenance: asserted")
assert.Contains(t, got, "Original.", "an existing section still wins over the model's rewrite")
assert.NotContains(t, got, "Renamed by the model")
}