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mathiasandClaude Opus 5.5 d90ce66fb2 fix(brainfs): refuse an in-brain file swapped in behind a symlink; in-brain test targets (#157)
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Review round 1 on PR #168:

- ReadRegular/ReadRegularMax Lstat the path, then open it again by path;
  os.Root follows an in-root final symlink even with O_NOFOLLOW, so a
  symlink to another brain file swapped in between was read (8k-109k
  raw/ leaks in RebuildIndex, LoadInventory, IndexDoc). The opened handle
  must now be the same file as the Lstat (os.SameFile). This covers every
  ReadRegular caller, slices 1-3 included.
- Every symlink test pointed outside the brain, which os.Root refuses on
  its own. Each now has an in-brain case too: a static in-brain link per
  reader, AssertNoLeakFrom with an in-brain target, and brainfs unit tests
  for ReadDirRegular and the in-brain swap.
- brainfstest: swap links are relative (os.Root refuses every absolute
  link, so an absolute in-brain target tested nothing), and each swapper
  has its own temp name (two swappers on one path deadlocked on each
  other's FIFO).
- IndexDoc indexes only a clean wiki/ or knowledge/ path (callers pass
  caller-supplied paths).
- Rule 9: TestLoadInventoryReturnsErrNotRegularForASymlinkedTypeDir now
  asserts the error; the backfill test says it aborts on a symlinked root.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-04 22:34:46 +02:00
mathiasandClaude Opus 5.5 c7a6429bae fix(graph,wiki): read the brain through brainfs (#157, slice 4)
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graphsync.IndexDoc/BackfillFromBrainDir and wiki.LoadInventory/
RebuildIndex read notes by path (os.ReadFile, os.Open, os.ReadDir +
open). A symlinked note put the target's title, aliases and wikilinks
into the knowledge graph, the wiki inventory (and the LLM prompts built
from it) and wiki/index.md; a FIFO hung each read.

- graphsync: IndexDoc and the backfill read through brainfs; the
  backfill walks with WalkRegular, skips a missing root and aborts on
  any other walk error, including a symlinked root.
- wiki: LoadInventory lists type dirs with the new
  brainfs.ReadDirRegular (every component a real dir, regular files
  only) and reads frontmatter through the root; a symlinked type dir is
  an error. RebuildIndex reads first sentences through the root.
- brainfstest's outside file now carries the sentinel in frontmatter
  title and aliases, a heading and a wikilink, so extractors that ignore
  the body are tested too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-04 22:17:44 +02:00
5 changed files with 29 additions and 134 deletions
-25
View File
@@ -1,25 +0,0 @@
package main
import (
"context"
"log/slog"
chassisauth "git.d-ma.be/mathias/mcp-chassis/auth"
"github.com/mathiasbq/hyperguild/ingestion/internal/startupretry"
)
// buildJWTValidator runs OIDC discovery under policy, so a 502 from an auth
// upstream that is not serving yet on a cold boot is retried instead of
// exiting (#83). It honours ctx between attempts.
func buildJWTValidator(
ctx context.Context, logger *slog.Logger, issuer, audience string, policy startupretry.Policy,
) (*chassisauth.JWTValidator, error) {
return startupretry.Do(ctx, policy, func(ctx context.Context) (*chassisauth.JWTValidator, error) {
v, err := chassisauth.NewJWTValidator(ctx, issuer, audience)
if err != nil {
logger.Warn("oidc discovery not ready, retrying", "err", err)
}
return v, err
})
}
@@ -1,86 +0,0 @@
package main
import (
"context"
"io"
"log/slog"
"net/http"
"net/http/httptest"
"sync/atomic"
"testing"
"time"
"github.com/stretchr/testify/assert"
"github.com/stretchr/testify/require"
"github.com/mathiasbq/hyperguild/ingestion/internal/startupretry"
)
// fakeIssuer answers OIDC discovery with 502 for the first fail requests, as
// ingress does while dex is not yet serving on a cold boot (#83), then with a
// real discovery document and an empty JWKS.
func fakeIssuer(t *testing.T, fail int32) (*httptest.Server, *atomic.Int32) {
t.Helper()
var discoveries atomic.Int32
mux := http.NewServeMux()
var srv *httptest.Server
mux.HandleFunc("/.well-known/openid-configuration", func(w http.ResponseWriter, _ *http.Request) {
if discoveries.Add(1) <= fail {
w.WriteHeader(http.StatusBadGateway)
return
}
w.Header().Set("Content-Type", "application/json")
_, _ = io.WriteString(w, `{"issuer":"`+srv.URL+`","jwks_uri":"`+srv.URL+`/keys"}`)
})
mux.HandleFunc("/keys", func(w http.ResponseWriter, _ *http.Request) {
w.Header().Set("Content-Type", "application/json")
_, _ = io.WriteString(w, `{"keys":[]}`)
})
srv = httptest.NewServer(mux)
t.Cleanup(srv.Close)
return srv, &discoveries
}
var fastPolicy = startupretry.Policy{Attempts: 8, Base: time.Millisecond, Max: 5 * time.Millisecond}
func TestBuildJWTValidatorRetriesDiscovery502sThenSucceeds(t *testing.T) {
srv, discoveries := fakeIssuer(t, 3)
ctx, cancel := context.WithCancel(context.Background())
defer cancel()
v, err := buildJWTValidator(ctx, slog.New(slog.DiscardHandler), srv.URL, "brain", fastPolicy)
require.NoError(t, err)
assert.NotNil(t, v)
assert.Equal(t, int32(4), discoveries.Load(), "three 502s, then the successful discovery")
}
func TestBuildJWTValidatorGivesUpAfterTheBudgetWithTheLastError(t *testing.T) {
srv, discoveries := fakeIssuer(t, 1000)
ctx, cancel := context.WithCancel(context.Background())
defer cancel()
_, err := buildJWTValidator(ctx, slog.New(slog.DiscardHandler), srv.URL, "brain", fastPolicy)
require.Error(t, err)
assert.Contains(t, err.Error(), "status 502")
assert.Equal(t, int32(8), discoveries.Load(), "bounded: exactly the attempt budget")
}
func TestBuildJWTValidatorStopsRetryingWhenTheContextIsCancelled(t *testing.T) {
srv, _ := fakeIssuer(t, 1000)
ctx, cancel := context.WithCancel(context.Background())
slow := startupretry.Policy{Attempts: 8, Base: time.Hour, Max: time.Hour}
done := make(chan error, 1)
go func() {
_, err := buildJWTValidator(ctx, slog.New(slog.DiscardHandler), srv.URL, "brain", slow)
done <- err
}()
time.Sleep(50 * time.Millisecond)
cancel()
select {
case err := <-done:
assert.ErrorIs(t, err, context.Canceled)
case <-time.After(3 * time.Second):
t.Fatal("did not return after the context was cancelled")
}
}
+9 -3
View File
@@ -381,9 +381,15 @@ func main() {
//
// The budget stays bounded: retrying forever would turn a misconfiguration
// into a process that looks alive and never serves.
jwtValidator, err := buildJWTValidator(ctx, logger,
os.Getenv("DEX_ISSUER_URL"), os.Getenv("MCP_AUDIENCE"),
startupretry.Policy{Attempts: 8, Base: time.Second, Max: 30 * time.Second})
jwtValidator, err := startupretry.Do(ctx,
startupretry.Policy{Attempts: 8, Base: time.Second, Max: 30 * time.Second},
func(ctx context.Context) (*chassisauth.JWTValidator, error) {
v, err := chassisauth.NewJWTValidator(ctx, os.Getenv("DEX_ISSUER_URL"), os.Getenv("MCP_AUDIENCE"))
if err != nil {
logger.Warn("oidc discovery not ready, retrying", "err", err)
}
return v, err
})
if err != nil {
logger.Error("build jwt validator", "err", err)
os.Exit(1)
+6 -6
View File
@@ -34,9 +34,9 @@ require (
github.com/rogpeppe/go-internal v1.15.0 // indirect
github.com/spf13/pflag v1.0.5 // indirect
github.com/x448/float16 v0.8.4 // indirect
golang.org/x/net v0.55.0 // indirect
golang.org/x/net v0.26.0 // indirect
golang.org/x/oauth2 v0.21.0 // indirect
golang.org/x/term v0.43.0 // indirect
golang.org/x/term v0.28.0 // indirect
golang.org/x/time v0.3.0 // indirect
google.golang.org/protobuf v1.34.2 // indirect
gopkg.in/evanphx/json-patch.v4 v4.12.0 // indirect
@@ -66,9 +66,9 @@ require (
github.com/lestrrat-go/option v1.0.1 // indirect
github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2 // indirect
github.com/segmentio/asm v1.2.0 // indirect
golang.org/x/crypto v0.51.0 // indirect
golang.org/x/sync v0.21.0 // indirect
golang.org/x/sys v0.45.0 // indirect
golang.org/x/text v0.39.0 // indirect
golang.org/x/crypto v0.32.0 // indirect
golang.org/x/sync v0.17.0 // indirect
golang.org/x/sys v0.31.0 // indirect
golang.org/x/text v0.29.0 // indirect
gopkg.in/yaml.v3 v3.0.1
)
+14 -14
View File
@@ -117,42 +117,42 @@ github.com/yuin/goldmark v1.2.1/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9dec
golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w=
golang.org/x/crypto v0.0.0-20191011191535-87dc89f01550/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI=
golang.org/x/crypto v0.0.0-20200622213623-75b288015ac9/go.mod h1:LzIPMQfyMNhhGPhUkYOs5KpL4U8rLKemX1yGLhDgUto=
golang.org/x/crypto v0.51.0 h1:IBPXwPfKxY7cWQZ38ZCIRPI50YLeevDLlLnyC5wRGTI=
golang.org/x/crypto v0.51.0/go.mod h1:8AdwkbraGNABw2kOX6YFPs3WM22XqI4EXEd8g+x7Oc8=
golang.org/x/crypto v0.32.0 h1:euUpcYgM8WcP71gNpTqQCn6rC2t6ULUPiOzfWaXVVfc=
golang.org/x/crypto v0.32.0/go.mod h1:ZnnJkOaASj8g0AjIduWNlq2NRxL0PlBrbKVyZ6V/Ugc=
golang.org/x/mod v0.2.0/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
golang.org/x/mod v0.3.0/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
golang.org/x/net v0.0.0-20190404232315-eb5bcb51f2a3/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=
golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
golang.org/x/net v0.0.0-20200226121028-0de0cce0169b/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
golang.org/x/net v0.0.0-20201021035429-f5854403a974/go.mod h1:sp8m0HH+o8qH0wwXwYZr8TS3Oi6o0r6Gce1SSxlDquU=
golang.org/x/net v0.55.0 h1:bcvxaJn3e1U6InsFWt1JUq1aSjnRxLzT2rtD2KfkDF8=
golang.org/x/net v0.55.0/go.mod h1:L5U2KuzuOe1lY7Z+aWVIKK6qEeJXnXV9yzGA+WCHJww=
golang.org/x/net v0.26.0 h1:soB7SVo0PWrY4vPW/+ay0jKDNScG2X9wFeYlXIvJsOQ=
golang.org/x/net v0.26.0/go.mod h1:5YKkiSynbBIh3p6iOc/vibscux0x38BZDkn8sCUPxHE=
golang.org/x/oauth2 v0.21.0 h1:tsimM75w1tF/uws5rbeHzIWxEqElMehnc+iW793zsZs=
golang.org/x/oauth2 v0.21.0/go.mod h1:XYTD2NtWslqkgxebSiOHnXEap4TF09sJSc7H1sXbhtI=
golang.org/x/sync v0.0.0-20190423024810-112230192c58/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
golang.org/x/sync v0.0.0-20190911185100-cd5d95a43a6e/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
golang.org/x/sync v0.0.0-20201020160332-67f06af15bc9/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
golang.org/x/sync v0.21.0 h1:HLII4xRRTtCRkxYp4HNFF0Js/Og6q2i++KXbg0gHCwM=
golang.org/x/sync v0.21.0/go.mod h1:9xrNwdLfx4jkKbNva9FpL6vEN7evnE43NNNJQ2LF3+0=
golang.org/x/sync v0.17.0 h1:l60nONMj9l5drqw6jlhIELNv9I0A4OFgRsG9k2oT9Ug=
golang.org/x/sync v0.17.0/go.mod h1:9KTHXmSnoGruLpwFjVSX0lNNA75CykiMECbovNTZqGI=
golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
golang.org/x/sys v0.0.0-20190412213103-97732733099d/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
golang.org/x/sys v0.0.0-20200930185726-fdedc70b468f/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
golang.org/x/sys v0.45.0 h1:dO4czNzziLiiXplLQgBCEpCvXQ3dnkn0SdaZSYdQ+FY=
golang.org/x/sys v0.45.0/go.mod h1:4GL1E5IUh+htKOUEOaiffhrAeqysfVGipDYzABqnCmw=
golang.org/x/term v0.43.0 h1:S4RLU2sB31O/NCl+zFN9Aru9A/Cq2aqKpTZJ6B+DwT4=
golang.org/x/term v0.43.0/go.mod h1:lrhlHNdQJHO+1qVYiHfFKVuVioJIheAc3fBSMFYEIsk=
golang.org/x/sys v0.31.0 h1:ioabZlmFYtWhL+TRYpcnNlLwhyxaM9kWTDEmfnprqik=
golang.org/x/sys v0.31.0/go.mod h1:BJP2sWEmIv4KK5OTEluFJCKSidICx8ciO85XgH3Ak8k=
golang.org/x/term v0.28.0 h1:/Ts8HFuMR2E6IP/jlo7QVLZHggjKQbhu/7H0LJFr3Gg=
golang.org/x/term v0.28.0/go.mod h1:Sw/lC2IAUZ92udQNf3WodGtn4k/XoLyZoh8v/8uiwek=
golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
golang.org/x/text v0.39.0 h1:UbZz4pLOvn600D6Oh6GGEI6VAmndrEBLv8/6BEXzyus=
golang.org/x/text v0.39.0/go.mod h1:3UwRclnC2g0TU9x8PZiyfOajCd1zaUNHF9cvqcQZ+ZM=
golang.org/x/text v0.29.0 h1:1neNs90w9YzJ9BocxfsQNHKuAT4pkghyXc4nhZ6sJvk=
golang.org/x/text v0.29.0/go.mod h1:7MhJOA9CD2qZyOKYazxdYMF85OwPdEr9jTtBpO7ydH4=
golang.org/x/time v0.3.0 h1:rg5rLMjNzMS1RkNLzCG38eapWhnYLFYXDXj2gOlr8j4=
golang.org/x/time v0.3.0/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
golang.org/x/tools v0.0.0-20180917221912-90fa682c2a6e/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=
golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
golang.org/x/tools v0.0.0-20200619180055-7c47624df98f/go.mod h1:EkVYQZoAsY45+roYkvgYkIh4xh/qjgUK9TdY2XT94GE=
golang.org/x/tools v0.0.0-20210106214847-113979e3529a/go.mod h1:emZCQorbCU4vsT4fOWvOPXz4eW1wZW4PmDk9uLelYpA=
golang.org/x/tools v0.47.0 h1:7Kn5x/d1svx/PzryTsqeoZN4TZwqeH5pGWjefhLi/1Q=
golang.org/x/tools v0.47.0/go.mod h1:dFHnyTvFWY212G+h7ZY4Vsp/K3U4/7W9TyVaAul8uCA=
golang.org/x/tools v0.36.0 h1:kWS0uv/zsvHEle1LbV5LE8QujrxB3wfQyxHfhOk0Qkg=
golang.org/x/tools v0.36.0/go.mod h1:WBDiHKJK8YgLHlcQPYQzNCkUxUypCaa5ZegCVutKm+s=
golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
golang.org/x/xerrors v0.0.0-20191204190536-9bdfabe68543/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=