Files
hyperguild/ingestion/internal/graphsync/graphsync.go
T
mathiasandClaude Opus 5.5 c7a6429bae
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fix(graph,wiki): read the brain through brainfs (#157, slice 4)
graphsync.IndexDoc/BackfillFromBrainDir and wiki.LoadInventory/
RebuildIndex read notes by path (os.ReadFile, os.Open, os.ReadDir +
open). A symlinked note put the target's title, aliases and wikilinks
into the knowledge graph, the wiki inventory (and the LLM prompts built
from it) and wiki/index.md; a FIFO hung each read.

- graphsync: IndexDoc and the backfill read through brainfs; the
  backfill walks with WalkRegular, skips a missing root and aborts on
  any other walk error, including a symlinked root.
- wiki: LoadInventory lists type dirs with the new
  brainfs.ReadDirRegular (every component a real dir, regular files
  only) and reads frontmatter through the root; a symlinked type dir is
  an error. RebuildIndex reads first sentences through the root.
- brainfstest's outside file now carries the sentinel in frontmatter
  title and aliases, a heading and a wikilink, so extractors that ignore
  the body are tested too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-04 22:17:44 +02:00

127 lines
4.1 KiB
Go

// Package graphsync glues the disk-resident brain markdown documents to
// the relational graph in [graphstore]. It is a tiny seam so that the
// MCP handlers can call one function after every successful write or
// ingest without having to know either the parser or the postgres
// schema.
//
// Every operation is best-effort from the caller's perspective: if the
// graph store is unconfigured or the doc parses to nothing usable, the
// helpers return nil. Real database errors are surfaced so the caller
// can log them.
package graphsync
import (
"context"
"errors"
"fmt"
"io/fs"
"path"
"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs"
"github.com/mathiasbq/hyperguild/ingestion/internal/graph"
"github.com/mathiasbq/hyperguild/ingestion/internal/graphstore"
)
// Store is the subset of graphstore.PGStore that graphsync requires.
// Tests can substitute a fake by satisfying this interface.
type Store interface {
UpsertEntity(ctx context.Context, e graph.Entity) error
ReplaceEdgesForDoc(ctx context.Context, docPath string, edges []graph.Edge) error
DeleteByDoc(ctx context.Context, docPath string) error
}
// Compile-time assertion that *graphstore.PGStore satisfies Store.
var _ Store = (*graphstore.PGStore)(nil)
// IndexDoc reads docPath under brainDir and pushes one Entity + its
// outgoing wikilink Edges into store. relPath must be the
// forward-slash path relative to brainDir (the same shape returned by
// api.WriteNote).
//
// nil store is a valid no-op so callers can wire the helper
// unconditionally and let configuration decide whether the graph is
// populated.
func IndexDoc(ctx context.Context, store Store, brainDir, relPath string) error {
if store == nil {
return nil
}
if relPath == "" {
return nil
}
bfs, err := brainfs.Open(brainDir)
if err != nil {
return fmt.Errorf("open brain: %w", err)
}
defer func() { _ = bfs.Close() }()
return indexDoc(ctx, store, bfs, relPath)
}
// indexDoc reads relPath through the brain root, regular files only
// (hyperguild#157): the brain is a Syncthing folder, and os.ReadFile
// followed a synced symlink into the graph and blocked on a FIFO.
func indexDoc(ctx context.Context, store Store, bfs *brainfs.Brain, relPath string) error {
content, err := bfs.ReadRegular(relPath)
if err != nil {
return fmt.Errorf("read %q: %w", relPath, err)
}
ent, edges, ok := graph.Extract(relPath, content)
if !ok {
return nil
}
if err := store.UpsertEntity(ctx, ent); err != nil {
return fmt.Errorf("upsert entity: %w", err)
}
if err := store.ReplaceEdgesForDoc(ctx, relPath, edges); err != nil {
return fmt.Errorf("replace edges: %w", err)
}
return nil
}
// BackfillFromBrainDir walks every markdown file under brainDir/wiki/
// and brainDir/knowledge/, parses each, and upserts the resulting
// Entity + Edges. Existing rows are overwritten; orphan rows for
// already-deleted files are NOT cleaned up — call this only on a
// fresh store, or follow with a separate prune pass.
//
// Intended for one-shot startup runs against a populated brain dir.
// Cost scales linearly with corpus size; ~30 wiki pages plus the
// knowledge corpus is a few hundred ms.
func BackfillFromBrainDir(ctx context.Context, store Store, brainDir string) (indexed int, _ error) {
if store == nil {
return 0, nil
}
bfs, err := brainfs.Open(brainDir)
if err != nil {
return 0, fmt.Errorf("open brain: %w", err)
}
defer func() { _ = bfs.Close() }()
for _, root := range []string{"wiki", "knowledge"} {
if _, err := bfs.Lstat(root); errors.Is(err, fs.ErrNotExist) {
continue
}
// Any walk error, including a root that is a symlink, aborts.
var walkErr error
err := bfs.WalkRegular(root, func(rel string) error {
if path.Ext(rel) != ".md" {
return nil
}
if err := indexDoc(ctx, store, bfs, rel); err != nil {
return fmt.Errorf("index %q: %w", rel, err)
}
indexed++
return nil
}, func(rel string, err error) {
if walkErr == nil {
walkErr = fmt.Errorf("%s: %w", rel, err)
}
})
if err == nil {
err = walkErr
}
if err != nil {
return indexed, fmt.Errorf("walk %s: %w", root, err)
}
}
return indexed, nil
}