Commit Graph
12 Commits
Author SHA1 Message Date
mathiasandClaude Opus 5.5 1a2a93d2f4 fix(watcher): refusals end in a terminal state; pin every converted writer (#158)
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Review round 1 on PR #195:
- A refused marker or archive write left no marker, so the note was
  reprocessed every interval (archive copies piling up; an LLM call per
  round on the failure path). The marker check now uses Lstat (any entry
  at the marker path counts, so a dangling marker link skips the note
  instead of looping), and a note whose archive copy or marker write is
  refused is remembered (path, size, mtime) and not retried until it
  changes.
- cleanRel no longer refuses a backslash: it is a legal filename byte on
  Linux, not a traversal, and a raw note named with one was never
  archived or marked.
- Tests now reach every converted writer: the log.md append (real
  raw/failed so the log is reached, symlinked log.md), a dangling marker
  link, the refused-retry loop with a positive control, a backslash name,
  a buildAndWrite swap race, and the claude-session archive with in-brain
  and outside symlinked archive dirs. The stale lint allowlist entry for
  appendWatcherLog is removed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-05 23:40:19 +02:00
mathiasandClaude Opus 5.5 77c44f298c fix: pipeline, backfill, watcher and archive writes go through the brain root (#158 part B)
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The remaining writers created or rewrote brain files by path:
- pipeline buildAndWrite: os.MkdirAll + os.WriteFile of every page.
- BackfillRefs: os.WriteFile of each concept page; a page swapped for a
  symlink after the read was written through (the race test overwrote an
  in-brain target before this change).
- watcher: the raw/processed and raw/failed archive copies (os.Create),
  the .processed/.failed markers and the log.md entry (os.OpenFile).
- cmd/server: the claude-session archive.

All now go through brainfs PutRegular/AppendRegular (new package-level
PutFile/AppendFile for one-off writers: the watcher's call-site lint bans
.Open calls in that file so raw/ reads stay on OpenRegular).

Stacked on #189 (needs PutRegular/AppendRegular).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-05 23:26:02 +02:00
mathiasandClaude Opus 5.5 f4636c7ef0 fix: creating and generated writes go through the brain root (#188, #158 part A) (#189)
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New brainfs PutRegular (create or replace), CreateRegular (create only), AppendRegular, Remove and RealParent: missing parents created one component at a time through the root, every existing component a real directory, new files created with O_EXCL and confirmed before writing. brain_write, promote/reject (O_EXCL create, source kept on refusal), StampProvenanceFile, BuildWingIndex, RebuildIndex, AppendLog and the tunnel candidate log use them; provenance.ApplyFile removed.

Fixes #188. Refs #158. Adversarial review: BLOCKED, BLOCKED, PASS.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-05 21:25:54 +00:00
mathiasandClaude Opus 5.5 ddd4bdc2ac fix(brainfs): refuse a file behind a symlinked directory for reads and writes (#173) (#187)
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ReadRegular, ReadRegularMax and WriteRegular require a clean, local path and a real directory at every level above the file, so an in-brain directory symlink (or a ".." after one) can no longer redirect brain_update, brain_tunnel, brain_read/get or the other readers elsewhere in the brain. session.Append opens through an os.Root on the brain dir, refuses a non-directory sessions dir, and writes only after confirming the log path is the regular file it opened.

Fixes #173. Adversarial review: BLOCKED, PASS. Follow-up: #188 (brain_write create path).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-05 20:17:37 +00:00
mathias 0c3e82ca0a test(brainfs): per-caller in-brain symlink targets for slices 1-3 (#171) (#172)
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Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-05 19:36:31 +00:00
mathiasandClaude Opus 5.5 febab3e45d fix: brain_tunnel, brain_update and session_log confine caller-supplied paths (#169) (#170)
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brain_tunnel accepts only clean wiki/.../*.md paths and reads/rewrites both notes through brainfs; new brainfs.WriteRegular never creates, never writes through a final symlink (Lstat + O_NOFOLLOW|O_NONBLOCK + os.SameFile on the handle, since os.Root follows in-root final symlinks even with O_NOFOLLOW). brain_update resolves like brain_edit (knowledge/ and wiki/ notes only) and reads/rewrites through brainfs. session_log requires a plain-name session id and opens with O_NOFOLLOW|O_NONBLOCK.

Fixes #169. Adversarial review: BLOCKED, BLOCKED, PASS (round 3 by the estate session's reviewer). Follow-ups: #173, #174.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-05 18:47:07 +00:00
mathiasandClaude Opus 5.5 0bd0fbf03e test(brainfstest): swap-race asserts fail when nothing was tested
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AssertNoLeakFrom and the search Query race test passed vacuously when
every symlink swap failed or every read errored. Both now count
successful symlink swaps and reads that returned the inside note and
fail if either is zero; the Query race reader no longer swallows
Query's error.

Verified by flipping: a swapper whose os.Symlink always fails turns
notes, wiki and search race tests red; Query on a missing brain dir
turns the search race test red.

Closes #177

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-05 09:32:25 +02:00
mathiasandClaude Opus 5.5 ef39435252 fix(brain): wing indexes and the link check read through brainfs (#157, slice 5a) (#175)
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BuildWingIndex/BuildAllWingIndexes list wings and halls with the new brainfs.ReadDirDirs and ReadDirRegular and read titles with ReadRegular: a symlinked note no longer reaches _index.md, a symlinked wing is refused (nothing written into its target), a symlinked hall is skipped. linkcheck entryIndex walks with WalkRegular, so a symlinked .md cannot make a link resolve, and a linked tree that is not a real directory is skipped with a warning (brain_write still lands).

Refs #157. Adversarial review: BLOCKED, PASS. Follow-up: #178.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-05 07:26:12 +00:00
mathiasandClaude Opus 5.5 77e32de33c fix(graph,wiki): read the brain through brainfs (#157, slice 4) (#168)
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graphsync, wiki inventory/index read through brainfs; brainfs refuses an in-brain file swapped in behind a symlink (os.SameFile). Gatekeeper round 2 PASS on d90ce66, CI run 9180 green.

Refs #157

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-05 04:53:34 +00:00
mathiasandClaude Opus 5.5 57d0fb0fae fix(vectorstore): walk and read the brain through brainfs (#157, slice 3) (#166)
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vectorstore.Sync walks and reads via brainfs (regular files only, handle-checked), so symlinked notes are no longer embedded and their old chunks are purged. brainfs.WalkRegular requires every component of its root to be a real directory (fixes in-brain root aliasing in Sync and search Wing/Wing+Hall). Walk errors, including a symlinked scan root, abort Sync before the delete pass. brainfs gains Lstat. Directory-swap race recorded as accepted residual (#167).

Refs #157. Adversarial review: BLOCKED, BLOCKED, PASS.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-04 06:35:17 +00:00
mathiasandClaude Opus 5.5 27a01dd2af fix(brain): context, brain_get and brain_read read through brainfs (#157, slice 2) (#165)
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readExcerpt, ReadNote and ReadScoped now read through brainfs (os.Root, regular files only, type checked on the opened handle), so a symlink swapped in after a check is not followed and a FIFO does not hang the reader. ReadRegularMax bounds the read itself with io.LimitReader(max+1). notes.Target carries the brain root.

Refs #157. Adversarial review round 2: PASS (round 1 BLOCKED: unbounded read, rule-9 test names).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-04 05:59:55 +00:00
mathias eb77305580 fix(search): walk and read the brain through an os.Root (#157, slice 1) (#161)
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Co-authored-by: Mathias <mthbqv@gmail.com>
2026-10-03 19:34:46 +00:00