test(ingestion): /mcp's JWT validator and resource_metadata; narrow comments

PR #183 review (comment 15474):
- TestBuildMuxAnswers503ToAJWTOnMCPWhileTheIssuerIsUnresolved: building
  /mcp's middleware with a nil validator turns it red.
- TestBuildMuxMCP401CarriesResourceMetadataInWWWAuthenticate: building it
  with resourceMetadataURL "" turns it red.
- main.go, routes.go and the testMux comment now say exactly what is
  untested: main's restAuth fields and public map passed to buildMux, and
  ListenAndServe (hyperguild#182). Stale public-route list in the
  TestBuildMuxDoesNotWrapPublicRoutes comment corrected.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

ingestion/cmd/server/jwt_validator.go

@@ -0,0 +1,26 @@
+package main
+
+import (
+	"context"
+	"fmt"
+	"log/slog"
+
+	chassisauth "git.d-ma.be/mathias/mcp-chassis/auth"
+)
+
+// buildJWTValidator builds the JWT validator for issuer (nil when issuer is
+// empty: JWT auth disabled). Since mcp-chassis v0.7 construction no longer
+// fails when OIDC discovery does (mcp-chassis#4): the issuer resolves lazily,
+// and until it does a JWT is answered 503-and-retry, not 401. That replaces
+// #83's boot-time retry loop (hyperguild#155). An issuer still unresolved at
+// boot is logged, so a misconfigured issuer is visible rather than silent.
+func buildJWTValidator(ctx context.Context, logger *slog.Logger, issuer, audience string) (*chassisauth.JWTValidator, error) {
+	v, err := chassisauth.NewJWTValidator(ctx, issuer, audience)
+	if err != nil {
+		return nil, fmt.Errorf("build jwt validator: %w", err)
+	}
+	if ok, rerr := v.Ready(ctx); !ok {
+		logger.Warn("jwt issuer not resolved at boot; JWTs answer 503 until it is", "issuer", issuer, "err", rerr)
+	}
+	return v, nil
+}

ingestion/cmd/server/jwt_validator_test.go

@@ -0,0 +1,111 @@
+package main
+
+import (
+	"bytes"
+	"context"
+	"io"
+	"log/slog"
+	"net/http"
+	"net/http/httptest"
+	"sync/atomic"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/metrics"
+)
+
+// fakeIssuer answers OIDC discovery with 502 for the first fail requests, as
+// ingress does while dex is not yet serving on a cold boot (#83), then with a
+// real discovery document and an empty JWKS.
+func fakeIssuer(t *testing.T, fail int32) (*httptest.Server, *atomic.Int32) {
+	t.Helper()
+	var discoveries atomic.Int32
+	mux := http.NewServeMux()
+	var srv *httptest.Server
+	mux.HandleFunc("/.well-known/openid-configuration", func(w http.ResponseWriter, _ *http.Request) {
+		if discoveries.Add(1) <= fail {
+			w.WriteHeader(http.StatusBadGateway)
+			return
+		}
+		w.Header().Set("Content-Type", "application/json")
+		_, _ = io.WriteString(w, `{"issuer":"`+srv.URL+`","jwks_uri":"`+srv.URL+`/keys"}`)
+	})
+	mux.HandleFunc("/keys", func(w http.ResponseWriter, _ *http.Request) {
+		w.Header().Set("Content-Type", "application/json")
+		_, _ = io.WriteString(w, `{"keys":[]}`)
+	})
+	srv = httptest.NewServer(mux)
+	t.Cleanup(srv.Close)
+	return srv, &discoveries
+}
+
+// #83 retried discovery at boot because chassis v0.2.0 failed construction on
+// a 502. Since chassis v0.7 (mcp-chassis#4) the validator is built anyway and
+// resolves the issuer lazily, so boot no longer waits or exits on it
+// (hyperguild#155). An unresolved issuer is logged at boot.
+func TestBuildJWTValidatorReturnsAValidatorWhileDiscovery502s(t *testing.T) {
+	srv, _ := fakeIssuer(t, 1000)
+	var buf bytes.Buffer
+	v, err := buildJWTValidator(context.Background(), slog.New(slog.NewTextHandler(&buf, nil)), srv.URL, "brain")
+	require.NoError(t, err)
+	assert.NotNil(t, v)
+	assert.Contains(t, buf.String(), "jwt issuer not resolved at boot")
+}
+
+func TestBuildJWTValidatorLogsNothingAgainstAHealthyIssuer(t *testing.T) {
+	srv, _ := fakeIssuer(t, 0)
+	var buf bytes.Buffer
+	v, err := buildJWTValidator(context.Background(), slog.New(slog.NewTextHandler(&buf, nil)), srv.URL, "brain")
+	require.NoError(t, err)
+	assert.NotNil(t, v)
+	assert.NotContains(t, buf.String(), "not resolved")
+}
+
+func TestBuildJWTValidatorIsNilWithoutAnIssuer(t *testing.T) {
+	v, err := buildJWTValidator(context.Background(), slog.New(slog.DiscardHandler), "", "brain")
+	require.NoError(t, err)
+	assert.Nil(t, v)
+}
+
+// With the issuer unresolved, a JWT on a REST route answers 503 (retry), not
+// 401: the token may be fine, the server just cannot check it yet.
+func TestBuildMuxAnswers503ToAJWTWhileTheIssuerIsUnresolved(t *testing.T) {
+	srv, _ := fakeIssuer(t, 1000)
+	v, err := buildJWTValidator(context.Background(), slog.New(slog.DiscardHandler), srv.URL, "brain")
+	require.NoError(t, err)
+	mux, err := buildMux(restAuth{token: routesTok, validator: v, realm: "brain"}, testHandler(t),
+		okHandler("mcp"), metrics.New(), nil)
+	require.NoError(t, err)
+	code, _ := do(t, mux, "GET", "/pending", "Bearer aaa.bbb.ccc")
+	assert.Equal(t, http.StatusServiceUnavailable, code)
+}
+
+// PR #183 review: /mcp shares REST's bearer, but only the static token was
+// asserted on it. With the issuer unresolved, a JWT on /mcp answers 503 too,
+// so /mcp's middleware was built with the JWT validator.
+func TestBuildMuxAnswers503ToAJWTOnMCPWhileTheIssuerIsUnresolved(t *testing.T) {
+	srv, _ := fakeIssuer(t, 1000)
+	v, err := buildJWTValidator(context.Background(), slog.New(slog.DiscardHandler), srv.URL, "brain")
+	require.NoError(t, err)
+	mux, err := buildMux(restAuth{token: routesTok, validator: v, realm: "brain"}, testHandler(t),
+		okHandler("mcp"), metrics.New(), nil)
+	require.NoError(t, err)
+	code, _ := do(t, mux, "POST", "/mcp", "Bearer aaa.bbb.ccc")
+	assert.Equal(t, http.StatusServiceUnavailable, code)
+}
+
+// PR #183 review: a 401 on /mcp names the protected-resource metadata in
+// WWW-Authenticate (what the claude.ai OAuth connector discovers from), so
+// /mcp's middleware was built with resourceMetadataURL.
+func TestBuildMuxMCP401CarriesResourceMetadataInWWWAuthenticate(t *testing.T) {
+	const rm = "https://brain.example/.well-known/oauth-protected-resource"
+	mux, err := buildMux(restAuth{token: routesTok, realm: "brain", resourceMetadataURL: rm}, testHandler(t),
+		okHandler("mcp"), metrics.New(), nil)
+	require.NoError(t, err)
+	rec := httptest.NewRecorder()
+	mux.ServeHTTP(rec, httptest.NewRequest(http.MethodPost, "/mcp", nil))
+	require.Equal(t, http.StatusUnauthorized, rec.Code)
+	assert.Contains(t, rec.Header().Get("WWW-Authenticate"), `resource_metadata="`+rm+`"`)
+}

ingestion/cmd/server/main.go

@@ -32,7 +32,6 @@ import (
 	"github.com/mathiasbq/hyperguild/ingestion/internal/pipeline"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/reranker"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/search"
-	"github.com/mathiasbq/hyperguild/ingestion/internal/startupretry"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/symlinkguard"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/vectorstore"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/watcher"
@@ -369,27 +368,15 @@ func main() {
 	// hyperguild#157: report a symlink that appears in the brain while running.
 	go symlinkguard.Watch(ctx, brainDir, symlinkScanInterval(os.Getenv), buildNotifier())
 
-	// Built before the watcher, the graph backfill and session ingestion, and
-	// retried rather than fatal (#83). Two separate reasons:
-	//
-	//   - On a cold cluster boot this pod can beat dex to serving and gets a
-	//     502 from ingress. Nothing is misconfigured; it simply started first.
-	//     Exiting there meant CrashLoopBackOff redoing the backfill on every
-	//     attempt, with exponential backoff stretching the brain outage.
-	//   - Constructing it first means a genuine config error (wrong issuer,
-	//     bad audience) fails in seconds instead of after all that work.
-	//
-	// The budget stays bounded: retrying forever would turn a misconfiguration
-	// into a process that looks alive and never serves.
-	jwtValidator, err := startupretry.Do(ctx,
-		startupretry.Policy{Attempts: 8, Base: time.Second, Max: 30 * time.Second},
-		func(ctx context.Context) (*chassisauth.JWTValidator, error) {
-			v, err := chassisauth.NewJWTValidator(ctx, os.Getenv("DEX_ISSUER_URL"), os.Getenv("MCP_AUDIENCE"))
-			if err != nil {
-				logger.Warn("oidc discovery not ready, retrying", "err", err)
-			}
-			return v, err
-		})
+	// Never fatal on an unreachable issuer (#83): on a cold cluster boot this
+	// pod can beat dex to serving and get a 502 from ingress, and exiting meant
+	// CrashLoopBackOff redoing the backfill. Since mcp-chassis v0.7 the
+	// validator resolves the issuer lazily and answers JWTs 503-and-retry until
+	// it does (hyperguild#155), so no boot retry is needed. A misconfigured
+	// issuer no longer exits the process: it is logged at boot and every JWT
+	// gets 503; the static bearer keeps working.
+	jwtValidator, err := buildJWTValidator(ctx, logger,
+		os.Getenv("DEX_ISSUER_URL"), os.Getenv("MCP_AUDIENCE"))
 	if err != nil {
 		logger.Error("build jwt validator", "err", err)
 		os.Exit(1)
@@ -529,8 +516,6 @@ func main() {
 		}
 	}
 
-	public["/mcp"] = chassisauth.BearerMiddleware(mcpToken, jwtValidator, "brain", resourceMetadataURL, mcpSrv)
-
 	// POST /capture (#53/#54): the uniform capture REST door. Needs a ticket
 	// tracker to file action items, so it only mounts when Gitea is
 	// configured. It reuses the MCP server's graph-wired brain store (one
@@ -554,7 +539,7 @@ func main() {
 		public["POST /capture"] = captureH
 		// Same use-case behind the MCP `capture` tool (#55 relay) so MCP-native
 		// harnesses (claude.ai, Crush, Pi, LLM Council) reach capture through
-		// the existing /mcp OAuth connector. mcpSrv is already wrapped above;
+		// the existing /mcp OAuth connector. buildMux wraps this same mcpSrv;
 		// WithCapture mutates the same instance, so the tool appears live.
 		mcpSrv.WithCapture(captureSvc, jwtValidator, mcpToken, "local-cli", resolver)
 		// hyperguild#97: a governance-file rewrite gets the same trail a
@@ -596,19 +581,18 @@ func main() {
 		os.Exit(1)
 	}
 
-	// /metrics — unauthenticated Prometheus endpoint. kube-prometheus-stack
-	// scrapes it via the ServiceMonitor in k3s/apps/supervisor/. The metrics
-	// middleware below wraps every other registered handler so it observes
-	// real request latency. /metrics itself is excluded from its own
-	// observation by registering it on the outer mux (post-wrap).
-	reg := metrics.New()
-	public["GET /metrics"] = http.HandlerFunc(reg.Handler())
-
-	// The whole router, built in one place so the test of buildMux is a test
-	// of production wiring (PR #152 review). The REST API's credential is the
-	// same as /mcp's.
-	mux, err := buildMux(restAuth{token: mcpToken, validator: jwtValidator, realm: "brain",
-		resourceMetadataURL: resourceMetadataURL}, h, public)
+	// /metrics — unauthenticated Prometheus endpoint, scraped via the
+	// ServiceMonitor in k3s/apps/supervisor/. buildMux registers it and wraps
+	// the whole router in the registry's middleware.
+	//
+	// The whole router, /mcp's bearer included, is built in buildMux so its
+	// tests are tests of production wiring (PR #152 review, hyperguild#154).
+	// The REST API's credential is the same as /mcp's. Untested here: the
+	// restAuth fields and the public map this call passes in (e.g. a nil
+	// validator would drop JWT auth on /mcp and REST and the suite stays
+	// green), and ListenAndServe serving the result unchanged (hyperguild#182).
+	handler, err := buildMux(restAuth{token: mcpToken, validator: jwtValidator, realm: "brain",
+		resourceMetadataURL: resourceMetadataURL}, h, mcpSrv, metrics.New(), public)
 	if err != nil {
 		logger.Error("build router", "err", err)
 		os.Exit(1)
@@ -629,7 +613,7 @@ func main() {
 		"watch_interval", watchIntervalLog,
 		"mcp_enabled", true,
 	)
-	if err := http.ListenAndServe(addr, reg.Middleware(mux)); err != nil {
+	if err := http.ListenAndServe(addr, handler); err != nil {
 		logger.Error("server stopped", "err", err)
 		os.Exit(1)
 	}

ingestion/cmd/server/routes.go

@@ -8,22 +8,22 @@ import (
 	chassisauth "git.d-ma.be/mathias/mcp-chassis/auth"
 
 	"github.com/mathiasbq/hyperguild/ingestion/internal/api"
+	"github.com/mathiasbq/hyperguild/ingestion/internal/metrics"
 )
 
-// publicRoutes is the complete set of patterns allowed on the outer mux,
-// outside the REST API's auth (hyperguild#149). Each authenticates itself or is
-// meant to be open: /mcp (bearer/JWT), /capture (bearer/JWT), the webhook
-// (HMAC), /oauth/token (client secret), OAuth metadata and /metrics (open).
-// A REST pattern added here would beat the authenticated catch-all by
-// specificity and ship open, which is why buildMux refuses anything else.
+// publicRoutes is the complete set of patterns a caller may register on the
+// outer mux, outside the REST API's auth (hyperguild#149). Each authenticates
+// itself or is meant to be open: /capture (bearer/JWT), the webhook (HMAC),
+// /oauth/token (client secret) and OAuth metadata (open). /mcp and /metrics
+// are not here: buildMux builds them itself (hyperguild#154). A REST pattern
+// added here would beat the authenticated catch-all by specificity and ship
+// open, which is why buildMux refuses anything else.
 var publicRoutes = map[string]bool{
-	"/mcp":                      true,
 	"POST /capture":             true,
 	"POST /webhooks/brain-sync": true,
 	"GET /.well-known/oauth-protected-resource":   true,
 	"GET /.well-known/oauth-authorization-server": true,
 	"POST /oauth/token":                           true,
-	"GET /metrics":                                true,
 }
 
 // restAuth is the credential the REST API checks: the same as /mcp's.
@@ -34,16 +34,25 @@ type restAuth struct {
 	resourceMetadataURL string
 }
 
-// buildMux is the server's whole router. The REST API is mounted at "/"
-// behind bearer auth that buildMux constructs itself, so a caller cannot pass
-// a no-op; public handlers are registered as given, and only for patterns on
-// the publicRoutes allowlist. It returns an http.Handler, not the
-// *ServeMux, so nothing can register a route on the result afterwards and
-// bypass the allowlist.
-func buildMux(auth restAuth, h *api.Handler, public map[string]http.Handler) (http.Handler, error) {
+// buildMux builds the handler main passes to ListenAndServe unchanged. The
+// REST API is mounted at "/" and /mcp is registered, both behind bearer auth
+// that buildMux constructs itself from auth (one credential), so a caller
+// cannot pass a no-op. GET /metrics serves reg, and the whole router is
+// wrapped in reg's middleware. Other public handlers are registered as given,
+// and only for patterns on the publicRoutes allowlist. It returns an
+// http.Handler, not the *ServeMux, so nothing can register a route on the
+// result. What stays untested is main's call site: the restAuth fields and
+// the public map main passes in, and ListenAndServe serving this handler
+// unchanged (hyperguild#182). The tests build their own arguments.
+func buildMux(
+	auth restAuth, h *api.Handler, mcpHandler http.Handler, reg *metrics.Registry, public map[string]http.Handler,
+) (http.Handler, error) {
 	if auth.token == "" {
 		return nil, errors.New("buildMux: REST auth needs a token")
 	}
+	if mcpHandler == nil || reg == nil {
+		return nil, errors.New("buildMux: needs the MCP handler and the metrics registry")
+	}
 	mux := http.NewServeMux()
 	for pattern, handler := range public {
 		if !publicRoutes[pattern] {
@@ -51,10 +60,15 @@ func buildMux(auth restAuth, h *api.Handler, public map[string]http.Handler) (ht
 		}
 		mux.Handle(pattern, handler)
 	}
-	mountREST(mux, h, func(next http.Handler) http.Handler {
+	bearer := func(next http.Handler) http.Handler {
 		return chassisauth.BearerMiddleware(auth.token, auth.validator, auth.realm, auth.resourceMetadataURL, next)
-	})
-	return mux, nil
+	}
+	mux.Handle("/mcp", bearer(mcpHandler))
+	// /metrics is registered on the mux and so observed by its own
+	// middleware, like any route.
+	mux.Handle("GET /metrics", reg.Handler())
+	mountREST(mux, h, bearer)
+	return reg.Middleware(mux), nil
 }
 
 // mountREST registers the REST API on its own mux and mounts it at "/" behind
@@ -73,5 +87,23 @@ func mountREST(mux *http.ServeMux, h *api.Handler, auth func(http.Handler) http.
 	rest.HandleFunc("POST /promote", h.Promote)
 	rest.HandleFunc("POST /backfill-embeddings", h.BackfillEmbeddings)
 	rest.HandleFunc("GET /pass-rate", h.PassRate)
-	mux.Handle("/", auth(rest))
+	mux.Handle("/", labelRESTPattern(rest, auth(rest)))
+}
+
+// labelRESTPattern sets the request's Pattern to the REST route it addresses
+// before auth runs, so the metrics middleware (which reads Pattern from the
+// same *http.Request) labels a refused request by its route rather than by
+// the "/" mount (hyperguild#155). A refused request to a path no route
+// matches keeps "/", so for refused requests the label set stays bounded by
+// the registered routes. That bound does not hold for authenticated
+// requests: an unregistered path reaches the REST mux, which 404s with an
+// empty Pattern, and the metrics middleware falls back to the raw URL path
+// (hyperguild#185).
+func labelRESTPattern(rest *http.ServeMux, next http.Handler) http.Handler {
+	return http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
+		if _, pattern := rest.Handler(r); pattern != "" {
+			r.Pattern = pattern
+		}
+		next.ServeHTTP(w, r)
+	})
 }

ingestion/cmd/server/routes_observability_test.go

@@ -0,0 +1,88 @@
+package main
+
+import (
+	"bytes"
+	"log/slog"
+	"net/http"
+	"net/http/httptest"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+)
+
+// wrongTokSentinel is a presented credential distinctive enough that any
+// occurrence in a log line is the raw token, not a coincidence.
+const wrongTokSentinel = "wrong-tok-sentinel-q7zx"
+
+// hyperguild#155: since #149 every REST route sits behind BearerMiddleware,
+// and chassis v0.2.0 refused without logging, so an unknown caller got
+// silent 401s. The chassis now writes an `mcp auth rejected` line, and the
+// presented token appears nowhere in the log as a bare value (PR #181
+// review: asserting on the "Bearer " header form could never fail, since
+// the chassis logs fields, not headers).
+func TestBuildMuxRejectionLogLineOmitsTheBarePresentedToken(t *testing.T) {
+	var buf bytes.Buffer
+	prev := slog.Default()
+	slog.SetDefault(slog.New(slog.NewTextHandler(&buf, nil)))
+	t.Cleanup(func() { slog.SetDefault(prev) })
+
+	code, _ := do(t, testMux(t), "POST", "/query", "Bearer "+wrongTokSentinel)
+	require.Equal(t, http.StatusUnauthorized, code)
+	assert.Contains(t, buf.String(), "mcp auth rejected")
+	assert.Contains(t, buf.String(), "path=/query")
+	assert.NotContains(t, buf.String(), wrongTokSentinel, "the rejected token is logged as a bare value")
+	assert.NotContains(t, buf.String(), routesTok, "the valid static token is logged")
+}
+
+// The `mcp auth accepted` line leaves out the valid static token.
+func TestBuildMuxAcceptedLogLineOmitsTheBareStaticToken(t *testing.T) {
+	var buf bytes.Buffer
+	prev := slog.Default()
+	slog.SetDefault(slog.New(slog.NewTextHandler(&buf, nil)))
+	t.Cleanup(func() { slog.SetDefault(prev) })
+
+	code, _ := do(t, testMux(t), "GET", "/pending", "Bearer "+routesTok)
+	require.Equal(t, http.StatusOK, code)
+	assert.Contains(t, buf.String(), "mcp auth accepted")
+	assert.NotContains(t, buf.String(), routesTok, "the accepted static token is logged as a bare value")
+}
+
+// An authenticated REST request is labelled with the REST mux's pattern:
+// the inner mux sets it on the same *http.Request the outer middleware reads.
+func TestMetricsLabelAnAuthenticatedRESTRequestWithItsRoutePattern(t *testing.T) {
+	mux, reg := testMuxAndRegistry(t)
+	code, _ := do(t, mux, "GET", "/pending", "Bearer "+routesTok)
+	require.Equal(t, http.StatusOK, code)
+
+	rec := httptest.NewRecorder()
+	reg.Handler().ServeHTTP(rec, httptest.NewRequest(http.MethodGet, "/metrics", nil))
+	assert.Contains(t, rec.Body.String(), `path="GET /pending"`)
+	assert.NotContains(t, rec.Body.String(), `path="/"`)
+}
+
+// hyperguild#155: a request refused by REST auth never reaches the REST mux,
+// so it was labelled path="/" and a 4xx on /query could not be told from one
+// on /write. It is now labelled with the REST pattern it was addressed to.
+func TestMetricsLabelARejectedRESTRequestWithItsRoutePattern(t *testing.T) {
+	mux, reg := testMuxAndRegistry(t)
+	code, _ := do(t, mux, "POST", "/query", "")
+	require.Equal(t, http.StatusUnauthorized, code)
+
+	rec := httptest.NewRecorder()
+	reg.Handler().ServeHTTP(rec, httptest.NewRequest(http.MethodGet, "/metrics", nil))
+	assert.Contains(t, rec.Body.String(), `path="POST /query",status="4xx"`)
+}
+
+// A path no REST route matches keeps the catch-all label, so an attacker
+// probing random URLs cannot grow the series set.
+func TestMetricsLabelARejectedUnknownPathWithTheCatchAll(t *testing.T) {
+	mux, reg := testMuxAndRegistry(t)
+	code, _ := do(t, mux, "POST", "/no-such-route-zq", "")
+	require.Equal(t, http.StatusUnauthorized, code)
+
+	rec := httptest.NewRecorder()
+	reg.Handler().ServeHTTP(rec, httptest.NewRequest(http.MethodGet, "/metrics", nil))
+	assert.Contains(t, rec.Body.String(), `path="/",status="4xx"`)
+	assert.NotContains(t, rec.Body.String(), "no-such-route-zq")
+}

ingestion/cmd/server/routes_test.go

@@ -12,6 +12,7 @@ import (
 	"github.com/stretchr/testify/require"
 
 	"github.com/mathiasbq/hyperguild/ingestion/internal/api"
+	"github.com/mathiasbq/hyperguild/ingestion/internal/metrics"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/pipeline"
 )
 
@@ -21,20 +22,34 @@ func okHandler(body string) http.Handler {
 	return http.HandlerFunc(func(w http.ResponseWriter, _ *http.Request) { _, _ = w.Write([]byte(body)) })
 }
 
-// testMux builds the router exactly as main does: buildMux with the full
-// public set main registers (stub handlers) and real bearer config.
-// hyperguild#149: the REST API is authenticated as a whole; the PR #152
-// review showed a test of a COPY of the router let main.go regress unseen.
+// testMux builds the router through buildMux, the function main calls, with
+// every allowlisted public pattern (stub handlers), a stub MCP server and a
+// static token only: no JWT validator and no resourceMetadataURL (the tests
+// in jwt_validator_test.go pass those). It does not use main's own restAuth
+// or public map (hyperguild#182). hyperguild#149: the REST API is
+// authenticated as a whole; the PR #152 review showed a test of a COPY of
+// the router let main.go regress unseen.
 func testMux(t *testing.T) http.Handler {
 	t.Helper()
-	h := api.NewHandler(t.TempDir(), slog.New(slog.NewTextHandler(os.Stderr, nil)), pipeline.Config{})
+	mux, _ := testMuxAndRegistry(t)
+	return mux
+}
+
+func testMuxAndRegistry(t *testing.T) (http.Handler, *metrics.Registry) {
+	t.Helper()
 	public := map[string]http.Handler{}
 	for p := range publicRoutes {
 		public[p] = okHandler("public " + p)
 	}
-	mux, err := buildMux(restAuth{token: routesTok, realm: "brain"}, h, public)
+	reg := metrics.New()
+	mux, err := buildMux(restAuth{token: routesTok, realm: "brain"}, testHandler(t), okHandler("mcp"), reg, public)
 	require.NoError(t, err)
-	return mux
+	return mux, reg
+}
+
+func testHandler(t *testing.T) *api.Handler {
+	t.Helper()
+	return api.NewHandler(t.TempDir(), slog.New(slog.NewTextHandler(os.Stderr, nil)), pipeline.Config{})
 }
 
 func do(t *testing.T, h http.Handler, method, path, authz string) (int, string) {
@@ -74,8 +89,9 @@ func TestBuildMuxAuthenticatesAnUnregisteredPath(t *testing.T) {
 }
 
 // buildMux registers public handlers as given, without adding auth: each
-// public route owns its own (bearer on /mcp, HMAC on the webhook, client
-// secret on /oauth/token) or is meant to be open (/metrics, OAuth metadata).
+// public route owns its own (bearer/JWT on /capture, HMAC on the webhook,
+// client secret on /oauth/token) or is meant to be open (OAuth metadata).
+// /mcp and /metrics are not public routes: buildMux builds them itself.
 func TestBuildMuxDoesNotWrapPublicRoutes(t *testing.T) {
 	r := testMux(t)
 	for p := range publicRoutes {
@@ -93,14 +109,53 @@ func TestBuildMuxDoesNotWrapPublicRoutes(t *testing.T) {
 // over the authenticated catch-all (more specific pattern), so it is refused.
 func TestBuildMuxRefusesAPublicPatternOffTheAllowlist(t *testing.T) {
 	h := api.NewHandler(t.TempDir(), slog.New(slog.NewTextHandler(os.Stderr, nil)), pipeline.Config{})
-	for _, p := range []string{"POST /query", "GET /pending", "/", "POST /metrics"} {
-		_, err := buildMux(restAuth{token: routesTok, realm: "brain"}, h, map[string]http.Handler{p: okHandler("x")})
+	// "/mcp" and "GET /metrics" are built by buildMux itself (hyperguild#154):
+	// passing either as public would register them unauthenticated or twice.
+	for _, p := range []string{"POST /query", "GET /pending", "/", "POST /metrics", "/mcp", "GET /metrics"} {
+		_, err := buildMux(restAuth{token: routesTok, realm: "brain"}, h, okHandler("mcp"), metrics.New(),
+			map[string]http.Handler{p: okHandler("x")})
 		assert.Error(t, err, "public pattern %q must be refused", p)
 	}
 }
 
 func TestBuildMuxRefusesAnEmptyToken(t *testing.T) {
 	h := api.NewHandler(t.TempDir(), slog.New(slog.NewTextHandler(os.Stderr, nil)), pipeline.Config{})
-	_, err := buildMux(restAuth{token: "", realm: "brain"}, h, nil)
+	_, err := buildMux(restAuth{token: "", realm: "brain"}, h, okHandler("mcp"), metrics.New(), nil)
 	assert.Error(t, err)
 }
+
+// hyperguild#154: /mcp's bearer was built in main.go, untested; the buildMux
+// tests used stubs. buildMux now wraps the MCP handler itself, with the same
+// credential as the REST API.
+func TestBuildMuxRefusesMCPWithoutAValidToken(t *testing.T) {
+	r := testMux(t)
+	for _, authz := range []string{"", "Bearer wrong"} {
+		code, body := do(t, r, "POST", "/mcp", authz)
+		assert.Equal(t, http.StatusUnauthorized, code, "authz %q", authz)
+		assert.NotEqual(t, "mcp", body)
+	}
+	code, body := do(t, r, "POST", "/mcp", "Bearer "+routesTok)
+	assert.Equal(t, http.StatusOK, code)
+	assert.Equal(t, "mcp", body)
+}
+
+func TestBuildMuxRefusesANilMCPHandlerOrRegistry(t *testing.T) {
+	auth := restAuth{token: routesTok, realm: "brain"}
+	_, err := buildMux(auth, testHandler(t), nil, metrics.New(), nil)
+	assert.Error(t, err)
+	_, err = buildMux(auth, testHandler(t), okHandler("mcp"), nil, nil)
+	assert.Error(t, err)
+}
+
+// hyperguild#154: main wrapped buildMux's result in the metrics middleware
+// before ListenAndServe, untested. buildMux now returns the handler main
+// serves as-is, metrics included: a request through it is observed and
+// exposed on its own GET /metrics.
+func TestBuildMuxObservesRequestsAndServesMetrics(t *testing.T) {
+	r := testMux(t)
+	code, _ := do(t, r, "GET", "/pending", "Bearer "+routesTok)
+	require.Equal(t, http.StatusOK, code)
+	code, body := do(t, r, "GET", "/metrics", "")
+	require.Equal(t, http.StatusOK, code)
+	assert.Contains(t, body, `path="GET /pending"`)
+}

ingestion/go.mod

@@ -34,9 +34,9 @@ require (
 	github.com/rogpeppe/go-internal v1.15.0 // indirect
 	github.com/spf13/pflag v1.0.5 // indirect
 	github.com/x448/float16 v0.8.4 // indirect
-	golang.org/x/net v0.26.0 // indirect
+	golang.org/x/net v0.55.0 // indirect
 	golang.org/x/oauth2 v0.21.0 // indirect
-	golang.org/x/term v0.28.0 // indirect
+	golang.org/x/term v0.43.0 // indirect
 	golang.org/x/time v0.3.0 // indirect
 	google.golang.org/protobuf v1.34.2 // indirect
 	gopkg.in/evanphx/json-patch.v4 v4.12.0 // indirect
@@ -51,7 +51,7 @@ require (
 )
 
 require (
-	git.d-ma.be/mathias/mcp-chassis v0.2.0
+	git.d-ma.be/mathias/mcp-chassis v0.7.1
 	github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc // indirect
 	github.com/decred/dcrd/dcrec/secp256k1/v4 v4.4.0 // indirect
 	github.com/goccy/go-json v0.10.3 // indirect
@@ -66,9 +66,9 @@ require (
 	github.com/lestrrat-go/option v1.0.1 // indirect
 	github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2 // indirect
 	github.com/segmentio/asm v1.2.0 // indirect
-	golang.org/x/crypto v0.32.0 // indirect
-	golang.org/x/sync v0.17.0 // indirect
-	golang.org/x/sys v0.31.0 // indirect
-	golang.org/x/text v0.29.0 // indirect
+	golang.org/x/crypto v0.51.0 // indirect
+	golang.org/x/sync v0.21.0 // indirect
+	golang.org/x/sys v0.45.0 // indirect
+	golang.org/x/text v0.39.0 // indirect
 	gopkg.in/yaml.v3 v3.0.1
 )

ingestion/go.sum

@@ -1,5 +1,5 @@
-git.d-ma.be/mathias/mcp-chassis v0.2.0 h1:6fLmb7xqRa2nNVWsHaUbbfbArgDXJw/gDhb09clBIjo=
-git.d-ma.be/mathias/mcp-chassis v0.2.0/go.mod h1:Ks7EK2UnGAN0H3rJjKUxUagX8/ZBdtLrOlcUbv0RwH8=
+git.d-ma.be/mathias/mcp-chassis v0.7.1 h1:4h8TOBHTA0L/no4IPcr4tLcQtmKUlhE2/cXyPdNFGmM=
+git.d-ma.be/mathias/mcp-chassis v0.7.1/go.mod h1:Ks7EK2UnGAN0H3rJjKUxUagX8/ZBdtLrOlcUbv0RwH8=
 github.com/creack/pty v1.1.9/go.mod h1:oKZEueFk5CKHvIhNR5MUki03XCEU+Q6VDXinZuGJ33E=
 github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
 github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
@@ -117,42 +117,42 @@ github.com/yuin/goldmark v1.2.1/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9dec
 golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w=
 golang.org/x/crypto v0.0.0-20191011191535-87dc89f01550/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI=
 golang.org/x/crypto v0.0.0-20200622213623-75b288015ac9/go.mod h1:LzIPMQfyMNhhGPhUkYOs5KpL4U8rLKemX1yGLhDgUto=
-golang.org/x/crypto v0.32.0 h1:euUpcYgM8WcP71gNpTqQCn6rC2t6ULUPiOzfWaXVVfc=
-golang.org/x/crypto v0.32.0/go.mod h1:ZnnJkOaASj8g0AjIduWNlq2NRxL0PlBrbKVyZ6V/Ugc=
+golang.org/x/crypto v0.51.0 h1:IBPXwPfKxY7cWQZ38ZCIRPI50YLeevDLlLnyC5wRGTI=
+golang.org/x/crypto v0.51.0/go.mod h1:8AdwkbraGNABw2kOX6YFPs3WM22XqI4EXEd8g+x7Oc8=
 golang.org/x/mod v0.2.0/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
 golang.org/x/mod v0.3.0/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
 golang.org/x/net v0.0.0-20190404232315-eb5bcb51f2a3/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=
 golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20200226121028-0de0cce0169b/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20201021035429-f5854403a974/go.mod h1:sp8m0HH+o8qH0wwXwYZr8TS3Oi6o0r6Gce1SSxlDquU=
-golang.org/x/net v0.26.0 h1:soB7SVo0PWrY4vPW/+ay0jKDNScG2X9wFeYlXIvJsOQ=
-golang.org/x/net v0.26.0/go.mod h1:5YKkiSynbBIh3p6iOc/vibscux0x38BZDkn8sCUPxHE=
+golang.org/x/net v0.55.0 h1:bcvxaJn3e1U6InsFWt1JUq1aSjnRxLzT2rtD2KfkDF8=
+golang.org/x/net v0.55.0/go.mod h1:L5U2KuzuOe1lY7Z+aWVIKK6qEeJXnXV9yzGA+WCHJww=
 golang.org/x/oauth2 v0.21.0 h1:tsimM75w1tF/uws5rbeHzIWxEqElMehnc+iW793zsZs=
 golang.org/x/oauth2 v0.21.0/go.mod h1:XYTD2NtWslqkgxebSiOHnXEap4TF09sJSc7H1sXbhtI=
 golang.org/x/sync v0.0.0-20190423024810-112230192c58/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20190911185100-cd5d95a43a6e/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20201020160332-67f06af15bc9/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
-golang.org/x/sync v0.17.0 h1:l60nONMj9l5drqw6jlhIELNv9I0A4OFgRsG9k2oT9Ug=
-golang.org/x/sync v0.17.0/go.mod h1:9KTHXmSnoGruLpwFjVSX0lNNA75CykiMECbovNTZqGI=
+golang.org/x/sync v0.21.0 h1:HLII4xRRTtCRkxYp4HNFF0Js/Og6q2i++KXbg0gHCwM=
+golang.org/x/sync v0.21.0/go.mod h1:9xrNwdLfx4jkKbNva9FpL6vEN7evnE43NNNJQ2LF3+0=
 golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
 golang.org/x/sys v0.0.0-20190412213103-97732733099d/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20200930185726-fdedc70b468f/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
-golang.org/x/sys v0.31.0 h1:ioabZlmFYtWhL+TRYpcnNlLwhyxaM9kWTDEmfnprqik=
-golang.org/x/sys v0.31.0/go.mod h1:BJP2sWEmIv4KK5OTEluFJCKSidICx8ciO85XgH3Ak8k=
-golang.org/x/term v0.28.0 h1:/Ts8HFuMR2E6IP/jlo7QVLZHggjKQbhu/7H0LJFr3Gg=
-golang.org/x/term v0.28.0/go.mod h1:Sw/lC2IAUZ92udQNf3WodGtn4k/XoLyZoh8v/8uiwek=
+golang.org/x/sys v0.45.0 h1:dO4czNzziLiiXplLQgBCEpCvXQ3dnkn0SdaZSYdQ+FY=
+golang.org/x/sys v0.45.0/go.mod h1:4GL1E5IUh+htKOUEOaiffhrAeqysfVGipDYzABqnCmw=
+golang.org/x/term v0.43.0 h1:S4RLU2sB31O/NCl+zFN9Aru9A/Cq2aqKpTZJ6B+DwT4=
+golang.org/x/term v0.43.0/go.mod h1:lrhlHNdQJHO+1qVYiHfFKVuVioJIheAc3fBSMFYEIsk=
 golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
 golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
-golang.org/x/text v0.29.0 h1:1neNs90w9YzJ9BocxfsQNHKuAT4pkghyXc4nhZ6sJvk=
-golang.org/x/text v0.29.0/go.mod h1:7MhJOA9CD2qZyOKYazxdYMF85OwPdEr9jTtBpO7ydH4=
+golang.org/x/text v0.39.0 h1:UbZz4pLOvn600D6Oh6GGEI6VAmndrEBLv8/6BEXzyus=
+golang.org/x/text v0.39.0/go.mod h1:3UwRclnC2g0TU9x8PZiyfOajCd1zaUNHF9cvqcQZ+ZM=
 golang.org/x/time v0.3.0 h1:rg5rLMjNzMS1RkNLzCG38eapWhnYLFYXDXj2gOlr8j4=
 golang.org/x/time v0.3.0/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
 golang.org/x/tools v0.0.0-20180917221912-90fa682c2a6e/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=
 golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/tools v0.0.0-20200619180055-7c47624df98f/go.mod h1:EkVYQZoAsY45+roYkvgYkIh4xh/qjgUK9TdY2XT94GE=
 golang.org/x/tools v0.0.0-20210106214847-113979e3529a/go.mod h1:emZCQorbCU4vsT4fOWvOPXz4eW1wZW4PmDk9uLelYpA=
-golang.org/x/tools v0.36.0 h1:kWS0uv/zsvHEle1LbV5LE8QujrxB3wfQyxHfhOk0Qkg=
-golang.org/x/tools v0.36.0/go.mod h1:WBDiHKJK8YgLHlcQPYQzNCkUxUypCaa5ZegCVutKm+s=
+golang.org/x/tools v0.47.0 h1:7Kn5x/d1svx/PzryTsqeoZN4TZwqeH5pGWjefhLi/1Q=
+golang.org/x/tools v0.47.0/go.mod h1:dFHnyTvFWY212G+h7ZY4Vsp/K3U4/7W9TyVaAul8uCA=
 golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 golang.org/x/xerrors v0.0.0-20191204190536-9bdfabe68543/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=

ingestion/internal/brain/index.go

@@ -2,12 +2,18 @@ package brain
 
 import (
 	"bufio"
+	"bytes"
+	"errors"
 	"fmt"
+	"io"
+	"io/fs"
 	"os"
 	"path/filepath"
 	"sort"
 	"strings"
 	"time"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs"
 )
 
 // noteEntry is one row in a Wing _index.md.
@@ -27,13 +33,18 @@ func BuildWingIndex(brainDir, wing string) error {
 		return fmt.Errorf("invalid wing %q", wing)
 	}
 	wingDir := filepath.Join(brainDir, "wiki", w)
-	if _, err := os.Stat(wingDir); os.IsNotExist(err) {
+	// Listed and read through the brain root (hyperguild#157): a wing or
+	// hall that is a symlink is not followed, and notes are regular files.
+	bfs, err := brainfs.Open(brainDir)
+	if err != nil {
+		return fmt.Errorf("open brain: %w", err)
+	}
+	defer func() { _ = bfs.Close() }()
+	if _, err := bfs.Lstat("wiki/" + w); errors.Is(err, fs.ErrNotExist) {
 		return nil
-	} else if err != nil {
-		return fmt.Errorf("stat wing: %w", err)
 	}
 
-	entries, err := collectWingEntries(wingDir)
+	entries, err := collectWingEntries(bfs, "wiki/"+w)
 	if err != nil {
 		return err
 	}
@@ -58,51 +69,47 @@ func BuildWingIndex(brainDir, wing string) error {
 
 // BuildAllWingIndexes regenerates _index.md for every wing under brain/wiki/.
 func BuildAllWingIndexes(brainDir string) error {
-	wikiDir := filepath.Join(brainDir, "wiki")
-	ents, err := os.ReadDir(wikiDir)
-	if os.IsNotExist(err) {
+	bfs, err := brainfs.Open(brainDir)
+	if err != nil {
+		return fmt.Errorf("open brain: %w", err)
+	}
+	wings, err := bfs.ReadDirDirs("wiki")
+	_ = bfs.Close()
+	if errors.Is(err, fs.ErrNotExist) {
 		return nil
 	}
 	if err != nil {
 		return fmt.Errorf("read wiki: %w", err)
 	}
-	for _, e := range ents {
-		if !e.IsDir() {
-			continue
-		}
-		if err := BuildWingIndex(brainDir, e.Name()); err != nil {
-			return fmt.Errorf("index %s: %w", e.Name(), err)
+	for _, w := range wings {
+		if err := BuildWingIndex(brainDir, w); err != nil {
+			return fmt.Errorf("index %s: %w", w, err)
 		}
 	}
 	return nil
 }
 
-func collectWingEntries(wingDir string) ([]noteEntry, error) {
+func collectWingEntries(bfs *brainfs.Brain, wingRel string) ([]noteEntry, error) {
 	var out []noteEntry
-	ents, err := os.ReadDir(wingDir)
+	halls, err := bfs.ReadDirDirs(wingRel)
 	if err != nil {
 		return nil, fmt.Errorf("read wing: %w", err)
 	}
-	for _, hallEnt := range ents {
-		if !hallEnt.IsDir() {
-			continue
-		}
-		hall := hallEnt.Name()
+	for _, hall := range halls {
 		if !IsValidHall(hall) {
 			continue
 		}
-		hallDir := filepath.Join(wingDir, hall)
-		notes, err := os.ReadDir(hallDir)
+		hallRel := wingRel + "/" + hall
+		names, err := bfs.ReadDirRegular(hallRel)
 		if err != nil {
 			return nil, fmt.Errorf("read hall %s: %w", hall, err)
 		}
-		for _, n := range notes {
-			if n.IsDir() || !strings.HasSuffix(n.Name(), ".md") || n.Name() == "_index.md" {
+		for _, name := range names {
+			if !strings.HasSuffix(name, ".md") || name == "_index.md" {
 				continue
 			}
-			slug := strings.TrimSuffix(n.Name(), ".md")
-			full := filepath.Join(hallDir, n.Name())
-			title, created := readTitleAndCreated(full, slug)
+			slug := strings.TrimSuffix(name, ".md")
+			title, created := readTitleAndCreatedIn(bfs, hallRel+"/"+name, slug)
 			out = append(out, noteEntry{Hall: hall, Slug: slug, Title: title, Created: created})
 		}
 	}
@@ -117,9 +124,40 @@ func readTitleAndCreated(path, slug string) (string, string) {
 		return slug, ""
 	}
 	defer func() { _ = f.Close() }()
+	title, created := parseTitleAndCreated(f)
+	if created == "" {
+		if info, err := os.Stat(path); err == nil {
+			created = info.ModTime().UTC().Format("2006-01-02")
+		}
+	}
+	return titleOrSlug(title, slug), created
+}
 
-	title, created := "", ""
-	scanner := bufio.NewScanner(f)
+// readTitleAndCreatedIn is readTitleAndCreated through the brain root,
+// regular files only (hyperguild#157).
+func readTitleAndCreatedIn(bfs *brainfs.Brain, rel, slug string) (string, string) {
+	content, err := bfs.ReadRegular(rel)
+	if err != nil {
+		return slug, ""
+	}
+	title, created := parseTitleAndCreated(bytes.NewReader(content))
+	if created == "" {
+		if info, err := bfs.Lstat(rel); err == nil {
+			created = info.ModTime().UTC().Format("2006-01-02")
+		}
+	}
+	return titleOrSlug(title, slug), created
+}
+
+func titleOrSlug(title, slug string) string {
+	if title == "" {
+		return strings.ReplaceAll(slug, "-", " ")
+	}
+	return title
+}
+
+func parseTitleAndCreated(r io.Reader) (title, created string) {
+	scanner := bufio.NewScanner(r)
 	inFrontmatter := false
 	for scanner.Scan() {
 		line := scanner.Text()
@@ -149,13 +187,5 @@ func readTitleAndCreated(path, slug string) (string, string) {
 			}
 		}
 	}
-	if title == "" {
-		title = strings.ReplaceAll(slug, "-", " ")
-	}
-	if created == "" {
-		if info, err := os.Stat(path); err == nil {
-			created = info.ModTime().UTC().Format("2006-01-02")
-		}
-	}
 	return title, created
 }

ingestion/internal/brain/index_root_test.go

@@ -0,0 +1,132 @@
+package brain_test
+
+import (
+	"os"
+	"path/filepath"
+	"testing"
+	"time"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brain"
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs/brainfstest"
+)
+
+func readIndex(t *testing.T, brainDir, wing string) string {
+	t.Helper()
+	b, _ := os.ReadFile(filepath.Join(brainDir, "wiki", wing, "_index.md"))
+	return string(b)
+}
+
+// hyperguild#157 slice 5: BuildWingIndex listed wiki/<wing>/<hall>/ with
+// os.ReadDir and opened each note by path, so a symlinked note put the
+// target's title into _index.md, and a FIFO hung the index build.
+func TestBuildWingIndexRefusesSymlinkedNotesAndSurvivesSwapRaces(t *testing.T) {
+	b := t.TempDir()
+	facts := filepath.Join(b, "wiki", "w", "facts")
+	require.NoError(t, os.MkdirAll(facts, 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(facts, "ok.md"), []byte("---\ntitle: zqinside\n---\n"), 0o644))
+	require.NoError(t, os.Symlink(brainfstest.Outside(t), filepath.Join(facts, "leak.md")))
+	inBrain := brainfstest.WriteSentinelAt(t, filepath.Join(b, "raw", "s.md"))
+	require.NoError(t, os.Symlink(filepath.Join("..", "..", "..", "raw", "s.md"), filepath.Join(facts, "inlink.md")))
+
+	require.NoError(t, brain.BuildWingIndex(b, "w"))
+	idx := readIndex(t, b, "w")
+	assert.Contains(t, idx, "zqinside", "positive control")
+	assert.NotContains(t, idx, brainfstest.Sentinel)
+	assert.NotContains(t, idx, "leak")
+	assert.NotContains(t, idx, "inlink")
+
+	p := filepath.Join(facts, "r.md")
+	read := func() string {
+		_ = brain.BuildWingIndex(b, "w")
+		return readIndex(t, b, "w")
+	}
+	brainfstest.AssertNoLeak(t, p, "---\ntitle: zqinside\n---\n", 1500*time.Millisecond, read)
+	brainfstest.AssertNoLeakFrom(t, p, "---\ntitle: zqinside\n---\n", inBrain, 1500*time.Millisecond, read)
+	brainfstest.AssertNoHang(t, p, "---\ntitle: zqinside\n---\n", 1500*time.Millisecond, 6*time.Second, func() { _ = read() })
+}
+
+// A symlinked hall is skipped while a real hall next to it is indexed; a
+// symlinked wing is refused and nothing is written into its target.
+func TestBuildWingIndexSkipsASymlinkedHallAndRefusesASymlinkedWing(t *testing.T) {
+	b := t.TempDir()
+	require.NoError(t, os.MkdirAll(filepath.Join(b, "raw", "facts"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(b, "raw", "facts", "r.md"), []byte("---\ntitle: zqrawonly\n---\n"), 0o644))
+	require.NoError(t, os.MkdirAll(filepath.Join(b, "wiki", "w", "decisions"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(b, "wiki", "w", "decisions", "d.md"), []byte("---\ntitle: zqrealhall\n---\n"), 0o644))
+	require.NoError(t, os.Symlink(filepath.Join("..", "..", "raw", "facts"), filepath.Join(b, "wiki", "w", "facts")))
+	require.NoError(t, os.Symlink(filepath.Join("..", "raw"), filepath.Join(b, "wiki", "alias")))
+
+	require.NoError(t, brain.BuildWingIndex(b, "w"))
+	idx, err := os.ReadFile(filepath.Join(b, "wiki", "w", "_index.md"))
+	require.NoError(t, err, "the wing index is written")
+	assert.Contains(t, string(idx), "zqrealhall", "the real hall is indexed")
+	assert.NotContains(t, string(idx), "zqrawonly", "the symlinked hall is not")
+
+	assert.Error(t, brain.BuildWingIndex(b, "alias"))
+	_, err = os.Stat(filepath.Join(b, "raw", "_index.md"))
+	assert.True(t, os.IsNotExist(err), "an index was written into the symlinked wing's target")
+}
+
+// BuildAllWingIndexes indexes the real wings and skips a symlinked one.
+func TestBuildAllWingIndexesSkipsASymlinkedWing(t *testing.T) {
+	b := t.TempDir()
+	require.NoError(t, os.MkdirAll(filepath.Join(b, "wiki", "w", "facts"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(b, "wiki", "w", "facts", "n.md"), []byte("---\ntitle: zqrealwing\n---\n"), 0o644))
+	require.NoError(t, os.MkdirAll(filepath.Join(b, "raw", "facts"), 0o755))
+	require.NoError(t, os.Symlink(filepath.Join("..", "raw"), filepath.Join(b, "wiki", "alias")))
+
+	require.NoError(t, brain.BuildAllWingIndexes(b))
+	idx, err := os.ReadFile(filepath.Join(b, "wiki", "w", "_index.md"))
+	require.NoError(t, err)
+	assert.Contains(t, string(idx), "zqrealwing")
+	_, err = os.Stat(filepath.Join(b, "raw", "_index.md"))
+	assert.True(t, os.IsNotExist(err))
+}
+
+// A link to a symlinked note does not resolve: only regular files count as
+// entries, so StripUnresolvedLinks unwraps it.
+func TestStripUnresolvedLinksDoesNotCountASymlinkedNoteAsAnEntry(t *testing.T) {
+	b := t.TempDir()
+	facts := filepath.Join(b, "wiki", "w", "facts")
+	require.NoError(t, os.MkdirAll(facts, 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(facts, "real.md"), []byte("x"), 0o644))
+	brainfstest.WriteSentinelAt(t, filepath.Join(b, "raw", "s.md"))
+	require.NoError(t, os.Symlink(filepath.Join("..", "..", "..", "raw", "s.md"), filepath.Join(facts, "ghost.md")))
+	out, unlinked, err := brain.StripUnresolvedLinks(b, "see [[real]] and [[ghost]]")
+	require.NoError(t, err)
+	assert.Contains(t, out, "[[real]]", "positive control")
+	assert.NotContains(t, out, "[[ghost]]")
+	assert.Contains(t, unlinked, "ghost")
+}
+
+// A linked tree (knowledge/ or wiki/) that is not a real directory is
+// skipped, not an error: StripUnresolvedLinks runs before every brain_write,
+// and an error there loses the learning.
+func TestStripUnresolvedLinksSkipsALinkedTreeThatIsNotARealDirectory(t *testing.T) {
+	for name, mk := range map[string]func(t *testing.T, b string){
+		"symlink to an in-brain dir": func(t *testing.T, b string) {
+			require.NoError(t, os.MkdirAll(filepath.Join(b, "raw", "k"), 0o755))
+			require.NoError(t, os.Symlink(filepath.Join("raw", "k"), filepath.Join(b, "knowledge")))
+		},
+		"dangling symlink": func(t *testing.T, b string) {
+			require.NoError(t, os.Symlink("nowhere", filepath.Join(b, "knowledge")))
+		},
+		"regular file": func(t *testing.T, b string) {
+			require.NoError(t, os.WriteFile(filepath.Join(b, "knowledge"), []byte("x"), 0o644))
+		},
+	} {
+		t.Run(name, func(t *testing.T) {
+			b := t.TempDir()
+			require.NoError(t, os.MkdirAll(filepath.Join(b, "wiki", "w", "facts"), 0o755))
+			require.NoError(t, os.WriteFile(filepath.Join(b, "wiki", "w", "facts", "real.md"), []byte("x"), 0o644))
+			mk(t, b)
+			out, _, err := brain.StripUnresolvedLinks(b, "learning [[real]] and [[gone]]")
+			require.NoError(t, err)
+			assert.Contains(t, out, "[[real]]", "links into wiki/ still resolve")
+			assert.NotContains(t, out, "[[gone]]")
+		})
+	}
+}

ingestion/internal/brain/linkcheck.go

@@ -1,12 +1,16 @@
 package brain
 
 import (
+	"errors"
 	"fmt"
-	"os"
-	"path/filepath"
+	"io/fs"
+	"log/slog"
+	"path"
 	"regexp"
 	"sort"
 	"strings"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs"
 )
 
 // wikilinkRE matches [[target]] and [[target|Display Text]].
@@ -98,29 +102,40 @@ var linkedTrees = []string{"knowledge", "wiki"}
 // one the audit will also resolve.
 func entryIndex(brainDir string) (map[string]struct{}, error) {
 	index := map[string]struct{}{}
+	// Walked through the brain root (hyperguild#157): only regular files
+	// count as entries, so a symlinked .md name cannot make a link resolve.
+	bfs, err := brainfs.Open(brainDir)
+	if err != nil {
+		return nil, fmt.Errorf("open brain: %w", err)
+	}
+	defer func() { _ = bfs.Close() }()
 	for _, dir := range linkedTrees {
-		root := filepath.Join(brainDir, dir)
-		if _, err := os.Stat(root); os.IsNotExist(err) {
+		if _, err := bfs.Lstat(dir); errors.Is(err, fs.ErrNotExist) {
 			continue
-		} else if err != nil {
-			return nil, fmt.Errorf("stat %s: %w", dir, err)
 		}
-		err := filepath.WalkDir(root, func(path string, d os.DirEntry, err error) error {
-			if err != nil {
-				return err
-			}
-			if d.IsDir() || !strings.HasSuffix(path, ".md") {
+		var walkErr error
+		err := bfs.WalkRegular(dir, func(rel string) error {
+			if !strings.HasSuffix(rel, ".md") {
 				return nil
 			}
-			rel, err := filepath.Rel(brainDir, path)
-			if err != nil {
-				return err
-			}
-			rel = filepath.ToSlash(rel)
-			index[strings.TrimSuffix(filepath.Base(rel), ".md")] = struct{}{}
+			index[strings.TrimSuffix(path.Base(rel), ".md")] = struct{}{}
 			index[strings.TrimPrefix(strings.TrimSuffix(rel, ".md"), "wiki/")] = struct{}{}
 			return nil
+		}, func(rel string, err error) {
+			// A linked tree that is not a real directory (a symlink, a
+			// file) is skipped, as filepath.WalkDir did: this runs before
+			// every brain_write, and an error here loses the learning.
+			if rel == dir && errors.Is(err, brainfs.ErrNotRegular) {
+				slog.Warn("link check: skipping a linked tree that is not a real directory", "dir", dir)
+				return
+			}
+			if walkErr == nil {
+				walkErr = fmt.Errorf("%s: %w", rel, err)
+			}
 		})
+		if err == nil {
+			err = walkErr
+		}
 		if err != nil {
 			return nil, fmt.Errorf("walk %s: %w", dir, err)
 		}

ingestion/internal/brainfs/brainfs.go

@@ -13,7 +13,9 @@ import (
 	"io"
 	"io/fs"
 	"os"
+	"path"
 	"path/filepath"
+	"strings"
 	"syscall"
 )
 
@@ -53,6 +55,76 @@ func (b *Brain) Rel(path string) (string, error) {
 	return filepath.ToSlash(rel), nil
 }
 
+// Lstat stats a brain-relative path through the root without following a
+// final symlink.
+func (b *Brain) Lstat(rel string) (fs.FileInfo, error) {
+	return b.root.Lstat(filepath.ToSlash(rel))
+}
+
+// realDir returns ErrNotRegular unless every component of rel is a real
+// directory. A swap after the check is not caught (accepted residual,
+// hyperguild#157).
+func (b *Brain) realDir(rel string) error {
+	if rel == "." {
+		return nil
+	}
+	prefix := ""
+	for _, part := range strings.Split(rel, "/") {
+		prefix = path.Join(prefix, part)
+		fi, err := b.root.Lstat(prefix)
+		if err != nil {
+			return err
+		}
+		if !fi.IsDir() {
+			return fmt.Errorf("%s: walk root component %s is not a directory: %w", rel, prefix, ErrNotRegular)
+		}
+	}
+	return nil
+}
+
+// ReadDirRegular lists the regular files directly in a brain-relative
+// directory, by name. Every component of relDir must be a real directory
+// (ErrNotRegular otherwise); symlinks, FIFOs, devices and subdirectories in
+// it are left out.
+func (b *Brain) ReadDirRegular(relDir string) ([]string, error) {
+	relDir = filepath.ToSlash(relDir)
+	if err := b.realDir(relDir); err != nil {
+		return nil, err
+	}
+	ents, err := fs.ReadDir(b.root.FS(), relDir)
+	if err != nil {
+		return nil, err
+	}
+	var names []string
+	for _, e := range ents {
+		if e.Type().IsRegular() {
+			names = append(names, e.Name())
+		}
+	}
+	return names, nil
+}
+
+// ReadDirDirs lists the real subdirectories directly in a brain-relative
+// directory, by name. Every component of relDir must be a real directory
+// (ErrNotRegular otherwise); symlinks to directories are left out.
+func (b *Brain) ReadDirDirs(relDir string) ([]string, error) {
+	relDir = filepath.ToSlash(relDir)
+	if err := b.realDir(relDir); err != nil {
+		return nil, err
+	}
+	ents, err := fs.ReadDir(b.root.FS(), relDir)
+	if err != nil {
+		return nil, err
+	}
+	var names []string
+	for _, e := range ents {
+		if e.Type().IsDir() {
+			names = append(names, e.Name())
+		}
+	}
+	return names, nil
+}
+
 // ReadRegular reads a brain-relative path, refusing anything that is not a
 // regular file, both before the open and on the opened handle.
 func (b *Brain) ReadRegular(rel string) ([]byte, error) {
@@ -63,7 +135,7 @@ func (b *Brain) ReadRegular(rel string) ([]byte, error) {
 	if !fi.Mode().IsRegular() {
 		return nil, fmt.Errorf("%s: %w", rel, ErrNotRegular)
 	}
-	return b.readOpened(rel)
+	return b.readOpenedMax(rel, -1, fi)
 }
 
 // readOpened opens rel non-blocking and reads it only if the OPENED handle is
@@ -77,7 +149,7 @@ func (b *Brain) ReadRegular(rel string) ([]byte, error) {
 // cannot create one; fs.protected_hardlinks=1 and the pod's secrets are on a
 // different filesystem from the brain volume, so a local caller cannot link
 // them in. Refusing Nlink > 1 is the next step if either changes.
-func (b *Brain) readOpened(rel string) ([]byte, error) { return b.readOpenedMax(rel, -1) }
+func (b *Brain) readOpened(rel string) ([]byte, error) { return b.readOpenedMax(rel, -1, nil) }
 
 // ReadRegularMax is ReadRegular with a size limit, checked on the opened
 // handle before reading (max < 0 means no limit).
@@ -89,10 +161,14 @@ func (b *Brain) ReadRegularMax(rel string, max int64) ([]byte, error) {
 	if !fi.Mode().IsRegular() {
 		return nil, fmt.Errorf("%s: %w", rel, ErrNotRegular)
 	}
-	return b.readOpenedMax(rel, max)
+	return b.readOpenedMax(rel, max, fi)
 }
 
-func (b *Brain) readOpenedMax(rel string, max int64) ([]byte, error) {
+// readOpenedMax opens rel and reads it if the opened handle is a regular file
+// and, when lfi is set, the same file the caller Lstat-ed: os.Root follows an
+// in-root final symlink even with O_NOFOLLOW, so a symlink to another brain
+// file swapped in between the Lstat and the open is refused only here.
+func (b *Brain) readOpenedMax(rel string, max int64, lfi fs.FileInfo) ([]byte, error) {
 	f, err := b.root.OpenFile(rel, os.O_RDONLY|syscall.O_NONBLOCK, 0)
 	if err != nil {
 		return nil, err
@@ -105,6 +181,9 @@ func (b *Brain) readOpenedMax(rel string, max int64) ([]byte, error) {
 	if !hfi.Mode().IsRegular() {
 		return nil, fmt.Errorf("%s: %w", rel, ErrNotRegular)
 	}
+	if lfi != nil && !os.SameFile(lfi, hfi) {
+		return nil, fmt.Errorf("%s: changed while opening: %w", rel, ErrNotRegular)
+	}
 	if max >= 0 && hfi.Size() > max {
 		return nil, fmt.Errorf("%s is %d bytes (limit %d): %w", rel, hfi.Size(), max, ErrTooLarge)
 	}
@@ -127,15 +206,34 @@ func (b *Brain) readOpenedMax(rel string, max int64) ([]byte, error) {
 }
 
 // wrapAfterStat is a test seam: it runs between the size check and the read,
-// and wraps the reader the read consumes.
+// and wraps the reader the read consumes. A package global: brainfs tests
+// must not use t.Parallel.
 var wrapAfterStat func(io.Reader) io.Reader
 
 // WalkRegular walks a brain-relative directory through the root and calls fn
-// for each regular file (directories are descended; symlinks, FIFOs and
-// devices are skipped, never followed). An entry error is passed to onErr and
-// the walk continues; a nil onErr ignores it.
+// for each regular file. Directories are descended; symlinks, FIFOs and
+// devices found by the walk are skipped. A walk root with any component that
+// is not a real directory goes to onErr as ErrNotRegular and nothing is
+// yielded. An entry error is passed to onErr and the walk continues; a nil
+// onErr ignores it.
+//
+// Accepted residual (hyperguild#157): a directory swapped for a symlink
+// between the listing and the read is followed. os.Root still keeps the read
+// inside the brain, but not inside relDir.
 func (b *Brain) WalkRegular(relDir string, fn func(rel string) error, onErr func(rel string, err error)) error {
-	return fs.WalkDir(b.root.FS(), filepath.ToSlash(relDir), func(p string, d fs.DirEntry, err error) error {
+	relDir = filepath.ToSlash(relDir)
+	// fs.WalkDir stats its root with a follow, and os.Root allows a symlink
+	// that stays inside the brain: knowledge -> . would alias the whole
+	// brain. Require every component of the root to be a real directory
+	// (Lstat checks only the last one).
+	err := b.realDir(relDir)
+	if err != nil {
+		if onErr != nil {
+			onErr(relDir, err)
+		}
+		return nil
+	}
+	return fs.WalkDir(b.root.FS(), relDir, func(p string, d fs.DirEntry, err error) error {
 		if err != nil {
 			if onErr != nil {
 				onErr(p, err)

ingestion/internal/brainfs/brainfs_test.go

@@ -3,8 +3,11 @@ package brainfs
 import (
 	"errors"
 	"io"
+	"io/fs"
 	"os"
 	"path/filepath"
+	"sync"
+	"sync/atomic"
 	"syscall"
 	"testing"
 	"time"
@@ -139,3 +142,141 @@ func (c *countingReader) Read(p []byte) (int, error) {
 	c.n += n
 	return n, err
 }
+
+func TestLstatDoesNotFollowSymlinksAndRefusesEscapes(t *testing.T) {
+	dir := t.TempDir()
+	outside := filepath.Join(t.TempDir(), "o.md")
+	require.NoError(t, os.WriteFile(outside, []byte("o"), 0o644))
+	require.NoError(t, os.Symlink(outside, filepath.Join(dir, "l.md")))
+	b, err := Open(dir)
+	require.NoError(t, err)
+	defer func() { _ = b.Close() }()
+	fi, err := b.Lstat("l.md")
+	require.NoError(t, err)
+	assert.Equal(t, fs.ModeSymlink, fi.Mode().Type())
+	_, err = b.Lstat("../" + filepath.Base(filepath.Dir(outside)) + "/o.md")
+	assert.Error(t, err)
+}
+
+func TestWalkRegularReportsASymlinkedWalkRootAndYieldsNothing(t *testing.T) {
+	dir := t.TempDir()
+	require.NoError(t, os.MkdirAll(filepath.Join(dir, "real"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(dir, "real", "n.md"), []byte("n"), 0o644))
+	require.NoError(t, os.Symlink("real", filepath.Join(dir, "alias")))
+	b, err := Open(dir)
+	require.NoError(t, err)
+	defer func() { _ = b.Close() }()
+	var got []string
+	var errs []error
+	require.NoError(t, b.WalkRegular("alias", func(rel string) error { got = append(got, rel); return nil },
+		func(_ string, err error) { errs = append(errs, err) }))
+	assert.Empty(t, got)
+	require.Len(t, errs, 1)
+	assert.ErrorIs(t, errs[0], ErrNotRegular)
+}
+
+func TestWalkRegularReportsASymlinkedIntermediateComponentOfTheWalkRoot(t *testing.T) {
+	dir := t.TempDir()
+	require.NoError(t, os.MkdirAll(filepath.Join(dir, "real", "sub"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(dir, "real", "sub", "n.md"), []byte("n"), 0o644))
+	require.NoError(t, os.Symlink("real", filepath.Join(dir, "alias")))
+	b, err := Open(dir)
+	require.NoError(t, err)
+	defer func() { _ = b.Close() }()
+	var got []string
+	var errs []error
+	require.NoError(t, b.WalkRegular("alias/sub", func(rel string) error { got = append(got, rel); return nil },
+		func(_ string, err error) { errs = append(errs, err) }))
+	assert.Empty(t, got)
+	require.Len(t, errs, 1)
+	assert.ErrorIs(t, errs[0], ErrNotRegular)
+}
+
+func TestReadDirRegularListsOnlyRegularFilesAndRefusesSymlinkedComponents(t *testing.T) {
+	dir := t.TempDir()
+	require.NoError(t, os.MkdirAll(filepath.Join(dir, "a", "b", "sub"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(dir, "a", "b", "n.md"), []byte("n"), 0o644))
+	require.NoError(t, os.WriteFile(filepath.Join(dir, "other.md"), []byte("o"), 0o644))
+	require.NoError(t, os.Symlink(filepath.Join("..", "..", "other.md"), filepath.Join(dir, "a", "b", "l.md")))
+	require.NoError(t, syscall.Mkfifo(filepath.Join(dir, "a", "b", "f.md"), 0o644))
+	require.NoError(t, os.Symlink("a", filepath.Join(dir, "alias")))
+	require.NoError(t, os.MkdirAll(filepath.Join(dir, "x"), 0o755))
+	require.NoError(t, os.Symlink(filepath.Join("..", "a"), filepath.Join(dir, "x", "mid")))
+	b, err := Open(dir)
+	require.NoError(t, err)
+	defer func() { _ = b.Close() }()
+
+	names, err := b.ReadDirRegular("a/b")
+	require.NoError(t, err)
+	assert.Equal(t, []string{"n.md"}, names)
+	for _, rel := range []string{"alias/b", "x/mid/b"} {
+		_, err := b.ReadDirRegular(rel)
+		assert.ErrorIs(t, err, ErrNotRegular, rel)
+	}
+}
+
+// A final component swapped for a symlink to another regular file in the
+// brain between the Lstat and the open: os.Root follows in-root links, so
+// only comparing the two (os.SameFile) refuses it.
+func TestReadRegularNeverReturnsAnInBrainFileSwappedInBehindASymlink(t *testing.T) {
+	dir := t.TempDir()
+	require.NoError(t, os.WriteFile(filepath.Join(dir, "s.md"), []byte("zqsamefilesentinel"), 0o644))
+	p := filepath.Join(dir, "r.md")
+	require.NoError(t, os.WriteFile(p, []byte("inside"), 0o644))
+	b, err := Open(dir)
+	require.NoError(t, err)
+	defer func() { _ = b.Close() }()
+
+	var stop atomic.Bool
+	var wg sync.WaitGroup
+	wg.Add(1)
+	go func() {
+		defer wg.Done()
+		tmp := p + ".swap"
+		for i := 0; !stop.Load(); i++ {
+			_ = os.Remove(tmp)
+			if i%2 == 0 {
+				_ = os.WriteFile(tmp, []byte("inside"), 0o644)
+			} else {
+				_ = os.Symlink("s.md", tmp)
+			}
+			_ = os.Rename(tmp, p)
+		}
+	}()
+	leaks, ok := 0, 0
+	for deadline := time.Now().Add(1500 * time.Millisecond); time.Now().Before(deadline); {
+		got, err := b.ReadRegular("r.md")
+		if err == nil {
+			ok++
+		}
+		if string(got) == "zqsamefilesentinel" {
+			leaks++
+		}
+		got, _ = b.ReadRegularMax("r.md", 1<<20)
+		if string(got) == "zqsamefilesentinel" {
+			leaks++
+		}
+	}
+	stop.Store(true)
+	wg.Wait()
+	assert.Zero(t, leaks)
+	assert.Positive(t, ok, "positive control: the regular file is read")
+}
+
+func TestReadDirDirsListsOnlyRealSubdirsAndRefusesSymlinkedComponents(t *testing.T) {
+	dir := t.TempDir()
+	require.NoError(t, os.MkdirAll(filepath.Join(dir, "a", "real"), 0o755))
+	require.NoError(t, os.MkdirAll(filepath.Join(dir, "other"), 0o755))
+	require.NoError(t, os.Symlink(filepath.Join("..", "other"), filepath.Join(dir, "a", "linked")))
+	require.NoError(t, os.WriteFile(filepath.Join(dir, "a", "f.md"), []byte("f"), 0o644))
+	require.NoError(t, os.Symlink("a", filepath.Join(dir, "alias")))
+	b, err := Open(dir)
+	require.NoError(t, err)
+	defer func() { _ = b.Close() }()
+
+	names, err := b.ReadDirDirs("a")
+	require.NoError(t, err)
+	assert.Equal(t, []string{"real"}, names)
+	_, err = b.ReadDirDirs("alias")
+	assert.ErrorIs(t, err, ErrNotRegular)
+}

ingestion/internal/brainfs/brainfstest/brainfstest.go

@@ -7,6 +7,7 @@
 package brainfstest
 
 import (
+	"fmt"
 	"os"
 	"path/filepath"
 	"strings"
@@ -20,29 +21,47 @@ import (
 // Sentinel marks the outside file's contents.
 const Sentinel = "zqbrainfssentinelonefiftyseven"
 
+// outsideContent carries Sentinel in every field a reader might extract: the
+// frontmatter title and aliases, a heading, a wikilink and the body.
+const outsideContent = "---\ntitle: " + Sentinel + "\naliases:\n  - " + Sentinel + "\n---\n# " + Sentinel +
+	"\n\n" + Sentinel + " [[" + Sentinel + "]]\n"
+
 // Outside writes a file outside any brain dir containing Sentinel.
-func Outside(t *testing.T) string {
+func Outside(t testing.TB) string {
 	t.Helper()
 	p := filepath.Join(t.TempDir(), "secret.md")
-	if err := os.WriteFile(p, []byte("# secret\n\n"+Sentinel), 0o644); err != nil {
+	if err := os.WriteFile(p, []byte(outsideContent), 0o644); err != nil {
 		t.Fatal(err)
 	}
 	return p
 }
 
+var swapSeq atomic.Int64
+
 // StartSwap renames, in a loop, a regular note (content inside) and either
 // a symlink to outside or a FIFO into path, until the test ends. FIFOs get a
 // writer held open until the swapper exits, so a reader that skips the
 // handle check parks forever instead of reading EOF. The swapper is stopped
-// and awaited before t.TempDir cleanup.
-func StartSwap(t *testing.T, path, inside, outside string, fifo bool) {
+// and awaited before t.TempDir cleanup. It returns the number of symlinks
+// or FIFOs actually renamed into path so far, so a caller can tell a race
+// that ran from one whose every swap failed (hyperguild#177).
+func StartSwap(t testing.TB, path, inside, outside string, fifo bool) *atomic.Int64 {
 	t.Helper()
+	var swaps atomic.Int64
 	var stop atomic.Bool
 	var wg sync.WaitGroup
 	wg.Add(1)
 	go func() {
 		defer wg.Done()
-		tmp := path + ".swap"
+		// A name of its own: swappers on one path share a test, and one
+		// opening another's FIFO for write would block forever.
+		tmp := fmt.Sprintf("%s.swap%d", path, swapSeq.Add(1))
+		// A relative link: os.Root refuses every absolute link on its own, so
+		// an absolute in-brain target would test nothing.
+		link := outside
+		if rel, err := filepath.Rel(filepath.Dir(path), outside); err == nil {
+			link = rel
+		}
 		var writers []*os.File
 		defer func() {
 			for _, w := range writers {
@@ -51,36 +70,85 @@ func StartSwap(t *testing.T, path, inside, outside string, fifo bool) {
 		}()
 		for i := 0; !stop.Load(); i++ {
 			_ = os.Remove(tmp)
+			var made error
 			switch {
 			case i%2 == 0:
 				_ = os.WriteFile(tmp, []byte(inside), 0o644)
 			case fifo:
-				if err := syscall.Mkfifo(tmp, 0o644); err == nil {
+				if made = syscall.Mkfifo(tmp, 0o644); made == nil {
 					if w, err := os.OpenFile(tmp, os.O_RDWR, 0); err == nil {
 						writers = append(writers, w)
 					}
 				}
 			default:
-				_ = os.Symlink(outside, tmp)
+				made = os.Symlink(link, tmp)
+			}
+			if err := os.Rename(tmp, path); err == nil && made == nil && i%2 == 1 {
+				swaps.Add(1)
 			}
-			_ = os.Rename(tmp, path)
 		}
 	}()
 	t.Cleanup(func() { stop.Store(true); wg.Wait() })
+	return &swaps
+}
+
+// WriteSentinelAt writes a file carrying Sentinel at p (creating its
+// directory), for an in-brain symlink target.
+func WriteSentinelAt(t *testing.T, p string) string {
+	t.Helper()
+	if err := os.MkdirAll(filepath.Dir(p), 0o755); err != nil {
+		t.Fatal(err)
+	}
+	if err := os.WriteFile(p, []byte(outsideContent), 0o644); err != nil {
+		t.Fatal(err)
+	}
+	return p
 }
 
 // AssertNoLeak loops read for d while a symlink swapper runs on path, and
-// fails if any output contains Sentinel.
+// fails if any output contains Sentinel. The symlink points outside the
+// brain; os.Root refuses that on its own, so pair it with AssertNoLeakFrom
+// and an in-brain target.
 func AssertNoLeak(t *testing.T, path, inside string, d time.Duration, read func() string) {
 	t.Helper()
-	StartSwap(t, path, inside, Outside(t), false)
-	leaks, iters := 0, 0
+	AssertNoLeakFrom(t, path, inside, Outside(t), d, read)
+}
+
+// InsideMarker must appear in the inside note's content and in read's
+// output whenever read saw that note: the floor below counts such reads.
+const InsideMarker = "inside"
+
+// AssertNoLeakFrom is AssertNoLeak with the symlink pointing at target, e.g.
+// a file elsewhere in the brain written with WriteSentinelAt.
+//
+// Beyond "no Sentinel in any output" it sets two floors, because without
+// them the assertion passes when nothing was tested (hyperguild#177): at
+// least one symlink must have been swapped into path, and at least one read
+// must have returned InsideMarker (a reader that always errors returns
+// nothing, and so never leaks).
+func AssertNoLeakFrom(t testing.TB, path, inside, target string, d time.Duration, read func() string) {
+	t.Helper()
+	if !strings.Contains(inside, InsideMarker) {
+		t.Fatalf("inside content must contain %q", InsideMarker)
+	}
+	swaps := StartSwap(t, path, inside, target, false)
+	leaks, iters, insideReads := 0, 0, 0
 	for deadline := time.Now().Add(d); time.Now().Before(deadline); iters++ {
-		leaks += strings.Count(read(), Sentinel)
+		out := read()
+		leaks += strings.Count(out, Sentinel)
+		if strings.Contains(out, InsideMarker) {
+			insideReads++
+		}
 	}
 	if leaks > 0 {
 		t.Fatalf("outside file leaked %d times in %d iterations", leaks, iters)
 	}
+	if n := swaps.Load(); n == 0 {
+		t.Fatalf("no symlink was swapped into %s in %d iterations: the race did not run", path, iters)
+	}
+	if insideReads == 0 {
+		t.Fatalf("no read in %d iterations returned the inside note (%q): the reader read nothing", iters, InsideMarker)
+	}
 }
 
 // AssertNoHang loops read for d while a FIFO swapper (held writers) runs on

ingestion/internal/brainfs/brainfstest/brainfstest_test.go

@@ -0,0 +1,79 @@
+package brainfstest
+
+import (
+	"fmt"
+	"os"
+	"path/filepath"
+	"runtime"
+	"syscall"
+	"testing"
+	"time"
+)
+
+// recordingTB stands in for the test under AssertNoLeakFrom so a fatal
+// there can be observed instead of failing this test. Fatalf ends the
+// calling goroutine the way testing.T does.
+type recordingTB struct {
+	testing.TB
+	failed bool
+	msg    string
+}
+
+func (r *recordingTB) Fatalf(format string, args ...any) {
+	r.failed, r.msg = true, fmt.Sprintf(format, args...)
+	runtime.Goexit()
+}
+
+func runAssert(t *testing.T, path, target string, read func() string) *recordingTB {
+	t.Helper()
+	r := &recordingTB{TB: t}
+	done := make(chan struct{})
+	go func() {
+		defer close(done)
+		AssertNoLeakFrom(r, path, "inside", target, 200*time.Millisecond, read)
+	}()
+	<-done
+	return r
+}
+
+// hyperguild#177: with every swap failing, no leak can occur, so the leak
+// assertion passed without testing anything.
+func TestAssertNoLeakFromFailsWhenNoSymlinkSwapSucceeds(t *testing.T) {
+	path := filepath.Join(t.TempDir(), "missing-dir", "r.md")
+	r := runAssert(t, path, Outside(t), func() string { return "inside" })
+	if !r.failed {
+		t.Fatal("AssertNoLeakFrom passed with zero successful symlink swaps")
+	}
+}
+
+// hyperguild#177: a reader that always errors returns nothing, so it never
+// leaks either.
+func TestAssertNoLeakFromFailsWhenNoReadReturnsTheInsideNote(t *testing.T) {
+	path := filepath.Join(t.TempDir(), "r.md")
+	r := runAssert(t, path, Outside(t), func() string { return "" })
+	if !r.failed {
+		t.Fatal("AssertNoLeakFrom passed with zero reads returning the inside note")
+	}
+}
+
+// Positive control: a reader that refuses symlinks and reads regular files
+// passes, so the floors do not fail a working reader.
+func TestAssertNoLeakFromPassesAReaderThatRefusesSymlinks(t *testing.T) {
+	path := filepath.Join(t.TempDir(), "r.md")
+	read := func() string {
+		f, err := os.OpenFile(path, os.O_RDONLY|noFollow, 0)
+		if err != nil {
+			return ""
+		}
+		defer func() { _ = f.Close() }()
+		b := make([]byte, 64)
+		n, _ := f.Read(b)
+		return string(b[:n])
+	}
+	r := runAssert(t, path, Outside(t), read)
+	if r.failed {
+		t.Fatalf("a symlink-refusing reader failed: %s", r.msg)
+	}
+}
+
+const noFollow = syscall.O_NOFOLLOW

ingestion/internal/graphsync/graphsync.go

@@ -12,10 +12,14 @@ package graphsync
 
 import (
 	"context"
+	"errors"
 	"fmt"
-	"os"
+	"io/fs"
+	"path"
 	"path/filepath"
+	"strings"
 
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/graph"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/graphstore"
 )
@@ -46,8 +50,25 @@ func IndexDoc(ctx context.Context, store Store, brainDir, relPath string) error
 	if relPath == "" {
 		return nil
 	}
-	abs := filepath.Join(brainDir, filepath.FromSlash(relPath))
-	content, err := os.ReadFile(abs)
+	// Callers pass caller-supplied paths (brain_tunnel, brain_update): index
+	// only a clean path under wiki/ or knowledge/.
+	if path.Clean(relPath) != relPath || !filepath.IsLocal(relPath) ||
+		(!strings.HasPrefix(relPath, "wiki/") && !strings.HasPrefix(relPath, "knowledge/")) {
+		return fmt.Errorf("index %q: not a clean wiki/ or knowledge/ path", relPath)
+	}
+	bfs, err := brainfs.Open(brainDir)
+	if err != nil {
+		return fmt.Errorf("open brain: %w", err)
+	}
+	defer func() { _ = bfs.Close() }()
+	return indexDoc(ctx, store, bfs, relPath)
+}
+
+// indexDoc reads relPath through the brain root, regular files only
+// (hyperguild#157): the brain is a Syncthing folder, and os.ReadFile
+// followed a synced symlink into the graph and blocked on a FIFO.
+func indexDoc(ctx context.Context, store Store, bfs *brainfs.Brain, relPath string) error {
+	content, err := bfs.ReadRegular(relPath)
 	if err != nil {
 		return fmt.Errorf("read %q: %w", relPath, err)
 	}
@@ -77,33 +98,34 @@ func BackfillFromBrainDir(ctx context.Context, store Store, brainDir string) (in
 	if store == nil {
 		return 0, nil
 	}
-	roots := []string{"wiki", "knowledge"}
-	for _, root := range roots {
-		base := filepath.Join(brainDir, root)
-		if _, err := os.Stat(base); os.IsNotExist(err) {
+	bfs, err := brainfs.Open(brainDir)
+	if err != nil {
+		return 0, fmt.Errorf("open brain: %w", err)
+	}
+	defer func() { _ = bfs.Close() }()
+	for _, root := range []string{"wiki", "knowledge"} {
+		if _, err := bfs.Lstat(root); errors.Is(err, fs.ErrNotExist) {
 			continue
 		}
-		err := filepath.WalkDir(base, func(path string, d os.DirEntry, walkErr error) error {
-			if walkErr != nil {
-				return walkErr
-			}
-			if d.IsDir() {
+		// Any walk error, including a root that is a symlink, aborts.
+		var walkErr error
+		err := bfs.WalkRegular(root, func(rel string) error {
+			if path.Ext(rel) != ".md" {
 				return nil
 			}
-			if filepath.Ext(path) != ".md" {
-				return nil
-			}
-			rel, relErr := filepath.Rel(brainDir, path)
-			if relErr != nil {
-				return fmt.Errorf("rel %q: %w", path, relErr)
-			}
-			rel = filepath.ToSlash(rel)
-			if err := IndexDoc(ctx, store, brainDir, rel); err != nil {
+			if err := indexDoc(ctx, store, bfs, rel); err != nil {
 				return fmt.Errorf("index %q: %w", rel, err)
 			}
 			indexed++
 			return nil
+		}, func(rel string, err error) {
+			if walkErr == nil {
+				walkErr = fmt.Errorf("%s: %w", rel, err)
+			}
 		})
+		if err == nil {
+			err = walkErr
+		}
 		if err != nil {
 			return indexed, fmt.Errorf("walk %s: %w", root, err)
 		}

ingestion/internal/graphsync/graphsync_root_test.go

@@ -0,0 +1,92 @@
+package graphsync
+
+import (
+	"context"
+	"fmt"
+	"os"
+	"path/filepath"
+	"testing"
+	"time"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs/brainfstest"
+)
+
+func (f *fakeStore) dump() string {
+	f.mu.Lock()
+	defer f.mu.Unlock()
+	return fmt.Sprintf("%+v %+v", f.upserts, f.replaces)
+}
+
+// hyperguild#157 slice 4: IndexDoc and BackfillFromBrainDir read notes with
+// os.ReadFile, so a symlinked note put the target's title and wikilinks into
+// the graph, and a FIFO hung the read.
+func TestIndexDocRefusesSymlinksAndSurvivesSwapRaces(t *testing.T) {
+	brain := t.TempDir()
+	facts := filepath.Join(brain, "wiki", "w", "facts")
+	require.NoError(t, os.MkdirAll(facts, 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(facts, "ok.md"), []byte("---\ntitle: zqinside\n---\nbody [[other]]\n"), 0o644))
+	require.NoError(t, os.Symlink(brainfstest.Outside(t), filepath.Join(facts, "leak.md")))
+
+	store := newFakeStore()
+	require.NoError(t, IndexDoc(context.Background(), store, brain, "wiki/w/facts/ok.md"))
+	assert.Contains(t, store.dump(), "zqinside", "positive control: a regular note is indexed")
+	assert.Error(t, IndexDoc(context.Background(), store, brain, "wiki/w/facts/leak.md"))
+	// A link to a file elsewhere in the brain: os.Root allows it, only the
+	// regular-file check refuses it.
+	inBrain := brainfstest.WriteSentinelAt(t, filepath.Join(brain, "raw", "s.md"))
+	require.NoError(t, os.Symlink(filepath.Join("..", "..", "..", "raw", "s.md"), filepath.Join(facts, "inlink.md")))
+	assert.Error(t, IndexDoc(context.Background(), store, brain, "wiki/w/facts/inlink.md"))
+	assert.NotContains(t, store.dump(), brainfstest.Sentinel)
+
+	p := filepath.Join(facts, "r.md")
+	read := func() string {
+		s := newFakeStore()
+		_ = IndexDoc(context.Background(), s, brain, "wiki/w/facts/r.md")
+		return s.dump()
+	}
+	brainfstest.AssertNoLeak(t, p, "---\ntitle: zqinside\n---\n", 1500*time.Millisecond, read)
+	brainfstest.AssertNoLeakFrom(t, p, "---\ntitle: zqinside\n---\n", inBrain, 1500*time.Millisecond, read)
+	brainfstest.AssertNoHang(t, p, "---\ntitle: zqinside\n---\n", 1500*time.Millisecond, 6*time.Second, func() { _ = read() })
+}
+
+func TestBackfillSkipsSymlinkedNotesAndAbortsOnASymlinkedRoot(t *testing.T) {
+	brain := t.TempDir()
+	facts := filepath.Join(brain, "wiki", "w", "facts")
+	require.NoError(t, os.MkdirAll(facts, 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(facts, "ok.md"), []byte("---\ntitle: zqinside\n---\n"), 0o644))
+	require.NoError(t, os.Symlink(brainfstest.Outside(t), filepath.Join(facts, "leak.md")))
+	require.NoError(t, os.MkdirAll(filepath.Join(brain, "raw"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(brain, "raw", "r.md"), []byte("---\ntitle: zqrawonly\n---\n"), 0o644))
+	require.NoError(t, os.Symlink(filepath.Join("..", "..", "..", "raw", "r.md"), filepath.Join(facts, "inlink.md")))
+	require.NoError(t, os.Symlink(".", filepath.Join(brain, "knowledge")))
+
+	store := newFakeStore()
+	_, err := BackfillFromBrainDir(context.Background(), store, brain)
+	assert.Error(t, err, "a symlinked root aborts the backfill")
+	assert.NotContains(t, store.dump(), brainfstest.Sentinel)
+	assert.NotContains(t, store.dump(), "zqrawonly")
+
+	require.NoError(t, os.Remove(filepath.Join(brain, "knowledge")))
+	store = newFakeStore()
+	n, err := BackfillFromBrainDir(context.Background(), store, brain)
+	require.NoError(t, err)
+	assert.Equal(t, 1, n, "only the regular note is indexed")
+	assert.Contains(t, store.dump(), "zqinside")
+	assert.NotContains(t, store.dump(), brainfstest.Sentinel)
+}
+
+// IndexDoc gets caller-supplied paths (brain_tunnel, brain_update): only a
+// clean path under wiki/ or knowledge/ is indexed.
+func TestIndexDocRefusesPathsOutsideWikiAndKnowledgeAndUncleanPaths(t *testing.T) {
+	brain := t.TempDir()
+	brainfstest.WriteSentinelAt(t, filepath.Join(brain, "raw", "secret.md"))
+	require.NoError(t, os.MkdirAll(filepath.Join(brain, "wiki", "w"), 0o755))
+	for _, p := range []string{"raw/secret.md", "wiki/w/../../raw/secret.md", "./raw/secret.md", "/raw/secret.md"} {
+		store := newFakeStore()
+		assert.Error(t, IndexDoc(context.Background(), store, brain, p), p)
+		assert.NotContains(t, store.dump(), brainfstest.Sentinel, p)
+	}
+}

ingestion/internal/search/brainroot_test.go

@@ -61,6 +61,31 @@ func TestQueryDoesNotFollowASymlinkedDirectory(t *testing.T) {
 	assert.Zero(t, leaked(rs))
 }
 
+// A search root that is a symlink staying inside the brain (wiki/<w> -> ..)
+// was followed by fs.WalkDir, aliasing raw/ and root files into results
+// (PR #166 review). The root is now Lstat-checked and skipped.
+func TestQueryDoesNotFollowASymlinkedWingRootInsideTheBrain(t *testing.T) {
+	brain, _, _ := searchBrain(t)
+	require.NoError(t, os.MkdirAll(filepath.Join(brain, "raw"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(brain, "raw", "r.md"), []byte("# r\n\nzqrawonly"), 0o644))
+	require.NoError(t, os.Symlink("..", filepath.Join(brain, "wiki", "alias")))
+	rs, err := Query(brain, QueryOptions{Query: "zqrawonly", Wing: "alias", Limit: 10})
+	require.NoError(t, err)
+	assert.Empty(t, rs)
+}
+
+// With a hall the search root is wiki/<wing>/<hall>; a symlinked <wing> with
+// a real <hall> directory under its target was followed (PR #166 round 2).
+func TestQueryDoesNotFollowASymlinkedWingUnderAWingAndHallRoot(t *testing.T) {
+	brain, _, _ := searchBrain(t)
+	require.NoError(t, os.MkdirAll(filepath.Join(brain, "raw", "facts"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(brain, "raw", "facts", "r.md"), []byte("# r\n\nzqrawhall"), 0o644))
+	require.NoError(t, os.Symlink(filepath.Join("..", "raw"), filepath.Join(brain, "wiki", "alias")))
+	rs, err := Query(brain, QueryOptions{Query: "zqrawhall", Wing: "alias", Hall: "facts", Limit: 10})
+	require.NoError(t, err)
+	assert.Empty(t, rs)
+}
+
 // swapInto keeps renaming a regular note, and either a symlink to outside or
 // a FIFO, into path. Each FIFO has a writer held open (as any local process
 // can): a FIFO with no writer reads EOF at once, which would let a reader
@@ -68,16 +93,20 @@ func TestQueryDoesNotFollowASymlinkedDirectory(t *testing.T) {
 // bypass of readOpened hung Query after 5 iterations).
 // startSwap runs swapInto until the test ends and waits for it before
 // t.TempDir's cleanup (hyperguild#162).
-func startSwap(t *testing.T, path, outside string, fifo bool) {
+// It returns the count of symlinks or FIFOs actually renamed into path
+// (hyperguild#177: a swapper whose every swap fails tests nothing).
+func startSwap(t *testing.T, path, outside string, fifo bool) *atomic.Int64 {
 	t.Helper()
 	var stop atomic.Bool
+	var swaps atomic.Int64
 	var wg sync.WaitGroup
 	wg.Add(1)
-	go func() { defer wg.Done(); swapInto(path, outside, fifo, &stop) }()
+	go func() { defer wg.Done(); swapInto(path, outside, fifo, &stop, &swaps) }()
 	t.Cleanup(func() { stop.Store(true); wg.Wait() })
+	return &swaps
 }
 
-func swapInto(path, outside string, fifo bool, stop *atomic.Bool) {
+func swapInto(path, outside string, fifo bool, stop *atomic.Bool, swaps *atomic.Int64) {
 	tmp := path + ".swap"
 	// Writers stay open until the swapper exits, so a reader parked on a
 	// FIFO stays parked (closing one would hand the reader EOF and hide the
@@ -90,33 +119,46 @@ func swapInto(path, outside string, fifo bool, stop *atomic.Bool) {
 	}()
 	for i := 0; !stop.Load(); i++ {
 		_ = os.Remove(tmp)
+		var made error
 		switch {
 		case i%2 == 0:
 			_ = os.WriteFile(tmp, []byte("# r\n\nzqinside "+"zqracenote"), 0o644)
 		case fifo:
-			if err := syscall.Mkfifo(tmp, 0o644); err == nil {
+			if made = syscall.Mkfifo(tmp, 0o644); made == nil {
 				if w, err := os.OpenFile(tmp, os.O_RDWR, 0); err == nil {
 					writers = append(writers, w)
 				}
 			}
 		default:
-			_ = os.Symlink(outside, tmp)
+			made = os.Symlink(outside, tmp)
+		}
+		if err := os.Rename(tmp, path); err == nil && made == nil && i%2 == 1 {
+			swaps.Add(1)
 		}
-		_ = os.Rename(tmp, path)
 	}
 }
 
 func TestQueryLeaksNothingUnderASymlinkSwapRace(t *testing.T) {
 	brain, facts, outside := searchBrain(t)
-	startSwap(t, filepath.Join(facts, "r.md"), outside, false)
-	leaks, iters := 0, 0
+	swaps := startSwap(t, filepath.Join(facts, "r.md"), outside, false)
+	leaks, iters, insideReads := 0, 0, 0
 	for deadline := time.Now().Add(1500 * time.Millisecond); time.Now().Before(deadline); iters++ {
-		rs, _ := Query(brain, QueryOptions{Query: sentinel157, Limit: 10})
+		rs, err := Query(brain, QueryOptions{Query: sentinel157, Limit: 10})
+		require.NoError(t, err)
 		leaks += leaked(rs)
+		// Positive control (hyperguild#177): a Query that always errors
+		// returns nothing and so never leaks.
+		rs, err = Query(brain, QueryOptions{Query: "zqracenote", Limit: 10})
+		require.NoError(t, err)
+		if len(rs) > 0 {
+			insideReads++
+		}
 	}
 	if leaks > 0 {
 		t.Fatalf("outside file leaked %d times in %d iterations", leaks, iters)
 	}
+	require.Positive(t, swaps.Load(), "no symlink was swapped in: the race did not run")
+	require.Positive(t, insideReads, "no Query returned the inside note")
 }
 
 func TestQueryDoesNotHangUnderAFIFOSwapRace(t *testing.T) {

ingestion/internal/startupretry/startupretry.go

@@ -1,75 +0,0 @@
-// Package startupretry retries a startup dependency that may not be serving
-// yet, instead of exiting on its first failure.
-//
-// It exists for the cold-boot ordering race (#83): on a cluster restart the
-// ingestion pod can reach OIDC discovery before dex is answering, gets a 502
-// from ingress, and dies — after having already connected postgres, backfilled
-// the graph and ingested session batches, all of which the restart redoes.
-// Nothing is misconfigured in that scenario; the pod simply started first.
-//
-// The budget is bounded on purpose. Retrying forever would turn a genuine
-// misconfiguration (wrong issuer URL, bad audience) into a process that looks
-// healthy and never serves, which is harder to diagnose than a crash loop.
-package startupretry
-
-import (
-	"context"
-	"fmt"
-	"time"
-)
-
-// Policy bounds the retry: at most Attempts calls, with the delay doubling
-// from Base and capped at Max.
-type Policy struct {
-	Attempts int           // total calls, including the first; < 1 means 1
-	Base     time.Duration // delay before the second attempt
-	Max      time.Duration // ceiling for the doubling delay
-}
-
-// Do calls fn until it succeeds, the attempt budget is spent, or ctx ends.
-//
-// The returned error wraps the last failure, so callers keep the diagnosis
-// they would have had without the retry.
-func Do[T any](ctx context.Context, p Policy, fn func(context.Context) (T, error)) (T, error) {
-	var zero T
-
-	attempts := p.Attempts
-	if attempts < 1 {
-		attempts = 1
-	}
-
-	delay := p.Base
-	var lastErr error
-
-	for i := range attempts {
-		if err := ctx.Err(); err != nil {
-			return zero, fmt.Errorf("startupretry: %w", err)
-		}
-
-		v, err := fn(ctx)
-		if err == nil {
-			return v, nil
-		}
-		lastErr = err
-
-		if i == attempts-1 {
-			break
-		}
-
-		if delay <= 0 {
-			delay = time.Second
-		}
-		if p.Max > 0 && delay > p.Max {
-			delay = p.Max
-		}
-
-		select {
-		case <-ctx.Done():
-			return zero, fmt.Errorf("startupretry: %w", ctx.Err())
-		case <-time.After(delay):
-		}
-		delay *= 2
-	}
-
-	return zero, fmt.Errorf("startupretry: gave up after %d attempts: %w", attempts, lastErr)
-}

ingestion/internal/startupretry/startupretry_test.go

@@ -1,142 +0,0 @@
-// ingestion/internal/startupretry/startupretry_test.go
-package startupretry
-
-import (
-	"context"
-	"errors"
-	"testing"
-	"time"
-)
-
-func fastPolicy(attempts int) Policy {
-	return Policy{Attempts: attempts, Base: time.Millisecond, Max: 2 * time.Millisecond}
-}
-
-func TestDo_ReturnsImmediatelyOnFirstSuccess(t *testing.T) {
-	calls := 0
-	got, err := Do(context.Background(), fastPolicy(5), func(context.Context) (string, error) {
-		calls++
-		return "ready", nil
-	})
-	if err != nil {
-		t.Fatalf("Do: %v", err)
-	}
-	if got != "ready" {
-		t.Errorf("got %q, want %q", got, "ready")
-	}
-	if calls != 1 {
-		t.Errorf("calls = %d, want 1", calls)
-	}
-}
-
-func TestDo_SurvivesTransientFailuresThenSucceeds(t *testing.T) {
-	// The observed cold-boot race: dex is not serving yet, ingress answers
-	// 502 for the first few attempts, then discovery works.
-	calls := 0
-	got, err := Do(context.Background(), fastPolicy(5), func(context.Context) (string, error) {
-		calls++
-		if calls < 4 {
-			return "", errors.New("oidc discovery: status 502")
-		}
-		return "ready", nil
-	})
-	if err != nil {
-		t.Fatalf("Do returned %v — a transient 502 must not be fatal", err)
-	}
-	if got != "ready" {
-		t.Errorf("got %q, want %q", got, "ready")
-	}
-	if calls != 4 {
-		t.Errorf("calls = %d, want 4", calls)
-	}
-}
-
-func TestDo_GivesUpAfterTheAttemptBudgetAndReportsTheLastError(t *testing.T) {
-	// A genuinely broken issuer must still fail — retrying forever would turn
-	// a config error into a silent hang, which is worse than crash-looping.
-	last := errors.New("oidc discovery: status 404")
-	calls := 0
-
-	_, err := Do(context.Background(), fastPolicy(3), func(context.Context) (string, error) {
-		calls++
-		return "", last
-	})
-
-	if !errors.Is(err, last) {
-		t.Fatalf("err = %v, want it to wrap the last failure", err)
-	}
-	if calls != 3 {
-		t.Errorf("calls = %d, want 3 (the attempt budget)", calls)
-	}
-}
-
-func TestDo_StopsPromptlyWhenTheContextIsCancelled(t *testing.T) {
-	ctx, cancel := context.WithCancel(context.Background())
-	calls := 0
-
-	done := make(chan struct{})
-	var err error
-	go func() {
-		defer close(done)
-		_, err = Do(ctx, Policy{Attempts: 100, Base: 50 * time.Millisecond, Max: time.Second},
-			func(context.Context) (string, error) {
-				calls++
-				if calls == 1 {
-					cancel()
-				}
-				return "", errors.New("still down")
-			})
-	}()
-
-	select {
-	case <-done:
-	case <-time.After(2 * time.Second):
-		t.Fatal("Do did not return after context cancellation")
-	}
-	if !errors.Is(err, context.Canceled) {
-		t.Errorf("err = %v, want context.Canceled", err)
-	}
-}
-
-func TestDo_BacksOffAndIsCappedByMax(t *testing.T) {
-	var delays []time.Duration
-	p := Policy{Attempts: 5, Base: 10 * time.Millisecond, Max: 25 * time.Millisecond}
-
-	last := time.Now()
-	_, _ = Do(context.Background(), p, func(context.Context) (string, error) {
-		now := time.Now()
-		delays = append(delays, now.Sub(last))
-		last = now
-		return "", errors.New("down")
-	})
-
-	// delays[0] is the first call (no wait); the rest are the sleeps.
-	if len(delays) != 5 {
-		t.Fatalf("attempts = %d, want 5", len(delays))
-	}
-	if delays[1] >= delays[2] {
-		t.Errorf("backoff is not growing: %v then %v", delays[1], delays[2])
-	}
-	for i, d := range delays[1:] {
-		if d > 2*p.Max {
-			t.Errorf("delay %d = %v, exceeds the Max cap %v with slack", i+1, d, p.Max)
-		}
-	}
-}
-
-func TestPolicy_ZeroValueStillMakesOneAttempt(t *testing.T) {
-	// A caller that forgets to configure the policy must not silently get a
-	// no-op that returns a nil validator and a nil error.
-	calls := 0
-	_, err := Do(context.Background(), Policy{}, func(context.Context) (string, error) {
-		calls++
-		return "", errors.New("down")
-	})
-
-	if calls != 1 {
-		t.Errorf("calls = %d, want 1", calls)
-	}
-	if err == nil {
-		t.Error("err = nil, want the failure surfaced")
-	}
-}

ingestion/internal/vectorstore/sync.go

@@ -2,12 +2,15 @@ package vectorstore
 
 import (
 	"context"
+	"errors"
 	"fmt"
+	"io/fs"
 	"log/slog"
-	"os"
-	"path/filepath"
+	"path"
 	"strings"
 	"time"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs"
 )
 
 // Embedder produces dense vectors. The embed package's Client satisfies
@@ -90,31 +93,38 @@ func Sync(ctx context.Context, brainDir string, store Store, embedder Embedder)
 	}
 	seenParents := make(map[string]struct{})
 
+	// Through the brain root, regular files only (hyperguild#157): the brain
+	// is a Syncthing folder, and os.ReadFile followed a synced symlink into
+	// the embeddings and blocked on a FIFO.
+	bfs, err := brainfs.Open(brainDir)
+	if err != nil {
+		return res, fmt.Errorf("open brain: %w", err)
+	}
+	defer func() { _ = bfs.Close() }()
+
 	for _, sub := range scanDirs {
-		root := filepath.Join(brainDir, sub)
-		if _, err := os.Stat(root); os.IsNotExist(err) {
+		if _, err := bfs.Lstat(sub); errors.Is(err, fs.ErrNotExist) {
 			continue
 		}
-
-		err = filepath.WalkDir(root, func(path string, d os.DirEntry, err error) error {
-			if err != nil {
-				return err
+		// Any other walk error, including a scan root that is a symlink,
+		// aborts the run below.
+		var walkErr error
+		onErr := func(rel string, err error) {
+			if walkErr == nil {
+				walkErr = fmt.Errorf("%s: %w", rel, err)
 			}
-			if d.IsDir() || !strings.HasSuffix(path, ".md") || d.Name() == "_index.md" {
+		}
+		err = bfs.WalkRegular(sub, func(relSlash string) error {
+			if !strings.HasSuffix(relSlash, ".md") || path.Base(relSlash) == "_index.md" {
 				return nil
 			}
-			rel, err := filepath.Rel(brainDir, path)
-			if err != nil {
-				return err
-			}
-			relSlash := filepath.ToSlash(rel)
 			seenParents[relSlash] = struct{}{}
 
 			if ps, ok := parents[relSlash]; ok {
 				// File already has chunks in the store. Re-embed only when
 				// the file has been edited since the oldest chunk was
 				// written. Tolerate clock skew with a sub-second grace.
-				info, statErr := d.Info()
+				info, statErr := bfs.Lstat(relSlash)
 				if statErr != nil {
 					res.Errors = append(res.Errors, fmt.Errorf("stat %s: %w", relSlash, statErr))
 					return nil
@@ -132,7 +142,7 @@ func Sync(ctx context.Context, brainDir string, store Store, embedder Embedder)
 				}
 			}
 
-			content, readErr := os.ReadFile(path)
+			content, readErr := bfs.ReadRegular(relSlash)
 			if readErr != nil {
 				res.Errors = append(res.Errors, fmt.Errorf("read %s: %w", relSlash, readErr))
 				return nil
@@ -151,7 +161,12 @@ func Sync(ctx context.Context, brainDir string, store Store, embedder Embedder)
 				res.Added++
 			}
 			return nil
-		})
+		}, onErr)
+		if err == nil {
+			err = walkErr
+		}
+		// Abort before the delete pass: an incomplete walk would leave
+		// seenParents short and delete chunks of files that still exist.
 		if err != nil {
 			return res, fmt.Errorf("walk %s: %w", sub, err)
 		}

ingestion/internal/vectorstore/sync_root_test.go

@@ -0,0 +1,126 @@
+package vectorstore_test
+
+import (
+	"context"
+	"os"
+	"path/filepath"
+	"strings"
+	"sync"
+	"testing"
+	"time"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs/brainfstest"
+	"github.com/mathiasbq/hyperguild/ingestion/internal/vectorstore"
+)
+
+// recordingEmbedder keeps every text it was asked to embed.
+type recordingEmbedder struct {
+	mu    sync.Mutex
+	texts []string
+}
+
+func (e *recordingEmbedder) Embed(_ context.Context, text string) ([]float32, error) {
+	e.mu.Lock()
+	defer e.mu.Unlock()
+	e.texts = append(e.texts, text)
+	return []float32{1}, nil
+}
+
+func (e *recordingEmbedder) all() string {
+	e.mu.Lock()
+	defer e.mu.Unlock()
+	return strings.Join(e.texts, "\n")
+}
+
+// hyperguild#157 slice 3: Sync walked wiki/ and knowledge/ and read each .md
+// with os.ReadFile, so a symlinked note had its target embedded and served by
+// semantic search, and a FIFO stalled the sync.
+func TestSyncRefusesSymlinkedNotesAndSurvivesSwapRaces(t *testing.T) {
+	brain := t.TempDir()
+	writeNote(t, brain, "wiki/w/facts/ok.md", "inside note")
+	require.NoError(t, os.Symlink(brainfstest.Outside(t), filepath.Join(brain, "wiki", "w", "facts", "leak.md")))
+
+	emb := &recordingEmbedder{}
+	store := &stubStore{}
+	_, err := vectorstore.Sync(context.Background(), brain, store, emb)
+	require.NoError(t, err)
+	assert.Contains(t, emb.all(), "inside note", "positive control: the regular note is embedded")
+	assert.NotContains(t, emb.all(), brainfstest.Sentinel)
+	for p := range store.upserts {
+		assert.NotContains(t, p, "leak.md")
+	}
+
+	p := filepath.Join(brain, "knowledge", "r.md")
+	require.NoError(t, os.MkdirAll(filepath.Dir(p), 0o755))
+	sync := func() string {
+		e := &recordingEmbedder{}
+		_, _ = vectorstore.Sync(context.Background(), brain, &stubStore{}, e)
+		return e.all()
+	}
+	brainfstest.AssertNoLeak(t, p, "inside", 1500*time.Millisecond, sync)
+	brainfstest.AssertNoHang(t, p, "inside", 1500*time.Millisecond, 6*time.Second, func() { _ = sync() })
+}
+
+// Chunks embedded from a symlinked note before this fix are deleted: the
+// note is no longer seen, so the delete pass drops its rows.
+func TestSyncDeletesChunksOfASymlinkedNote(t *testing.T) {
+	brain := t.TempDir()
+	writeNote(t, brain, "wiki/w/facts/ok.md", "inside note")
+	require.NoError(t, os.Symlink(brainfstest.Outside(t), filepath.Join(brain, "wiki", "w", "facts", "leak.md")))
+	store := &stubStore{known: map[string]time.Time{
+		"wiki/w/facts/leak.md#0001": {},
+		"wiki/w/facts/ok.md#0001":   {},
+	}}
+	_, err := vectorstore.Sync(context.Background(), brain, store, &recordingEmbedder{})
+	require.NoError(t, err)
+	assert.Equal(t, []string{"wiki/w/facts/leak.md#0001"}, store.deletes)
+}
+
+// A walk error aborts Sync before the delete pass, so chunks of files the
+// walk could not see are kept.
+func TestSyncAbortsBeforeDeletingWhenASubdirIsUnreadable(t *testing.T) {
+	if os.Geteuid() == 0 {
+		t.Skip("root ignores directory permissions")
+	}
+	brain := t.TempDir()
+	writeNote(t, brain, "wiki/w/facts/ok.md", "inside note")
+	locked := filepath.Join(brain, "wiki", "w")
+	require.NoError(t, os.Chmod(locked, 0o000))
+	t.Cleanup(func() { _ = os.Chmod(locked, 0o755) })
+	store := &stubStore{known: map[string]time.Time{"wiki/w/facts/ok.md#0001": {}}}
+	_, err := vectorstore.Sync(context.Background(), brain, store, &recordingEmbedder{})
+	assert.Error(t, err)
+	assert.Empty(t, store.deletes)
+}
+
+// A scan root that is a symlink inside the brain (knowledge -> .) was
+// followed by fs.WalkDir, aliasing raw/, sessions/ and root files into the
+// index. Sync now aborts on it, before embedding or deleting anything.
+func TestSyncAbortsOnASymlinkedScanRoot(t *testing.T) {
+	brain := t.TempDir()
+	writeNote(t, brain, "wiki/w/a.md", "wiki note")
+	writeNote(t, brain, "sessions/s1.md", "session note")
+	require.NoError(t, os.Symlink(".", filepath.Join(brain, "knowledge")))
+	emb := &recordingEmbedder{}
+	store := &stubStore{known: map[string]time.Time{"wiki/w/a.md#0001": {}}}
+	_, err := vectorstore.Sync(context.Background(), brain, store, emb)
+	assert.Error(t, err)
+	assert.NotContains(t, emb.all(), "session note")
+	for p := range store.upserts {
+		assert.False(t, strings.HasPrefix(p, "knowledge/"), "upserted %s", p)
+	}
+	assert.Empty(t, store.deletes)
+}
+
+// A missing scan root is skipped; the other root still syncs.
+func TestSyncSkipsAMissingScanRoot(t *testing.T) {
+	brain := t.TempDir()
+	writeNote(t, brain, "wiki/w/a.md", "wiki note")
+	emb := &recordingEmbedder{}
+	_, err := vectorstore.Sync(context.Background(), brain, &stubStore{}, emb)
+	require.NoError(t, err)
+	assert.Contains(t, emb.all(), "wiki note")
+}

ingestion/internal/wiki/index.go

@@ -7,6 +7,7 @@ import (
 	"path/filepath"
 	"strings"
 
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs"
 	"github.com/mathiasbq/hyperguild/ingestion/internal/textutil"
 )
 
@@ -16,6 +17,11 @@ func RebuildIndex(brainDir, date string) error {
 	if err != nil {
 		return fmt.Errorf("load inventory: %w", err)
 	}
+	bfs, err := brainfs.Open(brainDir)
+	if err != nil {
+		return fmt.Errorf("open brain: %w", err)
+	}
+	defer func() { _ = bfs.Close() }()
 
 	total := len(inv[PageTypeConcept]) + len(inv[PageTypeEntity]) + len(inv[PageTypeSource])
 	var sb strings.Builder
@@ -34,7 +40,7 @@ func RebuildIndex(brainDir, date string) error {
 		label := strings.ToUpper(string(pt)[:1]) + string(pt)[1:]
 		fmt.Fprintf(&sb, "## %s\n\n", label)
 		for _, e := range entries {
-			summary := pageFirstSentence(brainDir, e)
+			summary := pageFirstSentence(bfs, e)
 			if summary != "" {
 				fmt.Fprintf(&sb, "- [[%s|%s]] — %s\n", e.Slug, e.Title, summary)
 			} else {
@@ -48,9 +54,10 @@ func RebuildIndex(brainDir, date string) error {
 	return os.WriteFile(dest, []byte(sb.String()), 0o644)
 }
 
-func pageFirstSentence(brainDir string, e Entry) string {
-	path := filepath.Join(brainDir, "wiki", string(e.Type), e.Slug+".md")
-	content, err := os.ReadFile(path)
+// pageFirstSentence reads the page through the brain root, regular files
+// only (hyperguild#157).
+func pageFirstSentence(bfs *brainfs.Brain, e Entry) string {
+	content, err := bfs.ReadRegular("wiki/" + string(e.Type) + "/" + e.Slug + ".md")
 	if err != nil {
 		return ""
 	}

ingestion/internal/wiki/inventory.go

@@ -3,36 +3,45 @@ package wiki
 
 import (
 	"bufio"
+	"bytes"
+	"errors"
 	"fmt"
-	"os"
-	"path/filepath"
+	"io/fs"
 	"strings"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs"
 )
 
 // LoadInventory walks brain/wiki/ and returns all pages grouped by type.
-// Missing subdirectories are silently skipped.
+// Missing subdirectories are silently skipped. Pages are listed and read
+// through the brain root, regular files only (hyperguild#157); a type
+// directory that is a symlink is an error.
 func LoadInventory(brainDir string) (map[PageType][]Entry, error) {
 	result := map[PageType][]Entry{
 		PageTypeConcept: {},
 		PageTypeEntity:  {},
 		PageTypeSource:  {},
 	}
+	bfs, err := brainfs.Open(brainDir)
+	if err != nil {
+		return nil, fmt.Errorf("open brain: %w", err)
+	}
+	defer func() { _ = bfs.Close() }()
 	for pt := range result {
-		dir := filepath.Join(brainDir, "wiki", string(pt))
-		entries, err := os.ReadDir(dir)
-		if os.IsNotExist(err) {
+		dir := "wiki/" + string(pt)
+		names, err := bfs.ReadDirRegular(dir)
+		if errors.Is(err, fs.ErrNotExist) {
 			continue
 		}
 		if err != nil {
 			return nil, fmt.Errorf("read dir %s: %w", dir, err)
 		}
-		for _, e := range entries {
-			if e.IsDir() || !strings.HasSuffix(e.Name(), ".md") {
+		for _, name := range names {
+			if !strings.HasSuffix(name, ".md") {
 				continue
 			}
-			slug := strings.TrimSuffix(e.Name(), ".md")
-			path := filepath.Join(dir, e.Name())
-			title, aliases := readFrontmatter(path, slug)
+			slug := strings.TrimSuffix(name, ".md")
+			title, aliases := readFrontmatter(bfs, dir+"/"+name, slug)
 			result[pt] = append(result[pt], Entry{Slug: slug, Title: title, Aliases: aliases, Type: pt})
 		}
 	}
@@ -41,15 +50,14 @@ func LoadInventory(brainDir string) (map[PageType][]Entry, error) {
 
 // readFrontmatter extracts title and aliases from YAML frontmatter.
 // Falls back to slug for title and empty aliases on any error.
-func readFrontmatter(path, fallbackSlug string) (title string, aliases []string) {
+func readFrontmatter(bfs *brainfs.Brain, rel, fallbackSlug string) (title string, aliases []string) {
 	title = fallbackSlug
-	f, err := os.Open(path)
+	content, err := bfs.ReadRegular(rel)
 	if err != nil {
 		return
 	}
-	defer f.Close() //nolint:errcheck
 
-	scanner := bufio.NewScanner(f)
+	scanner := bufio.NewScanner(bytes.NewReader(content))
 	inFM := false
 	inAliases := false
 	for scanner.Scan() {

ingestion/internal/wiki/root_test.go

@@ -0,0 +1,79 @@
+package wiki
+
+import (
+	"fmt"
+	"os"
+	"path/filepath"
+	"testing"
+	"time"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs"
+	"github.com/mathiasbq/hyperguild/ingestion/internal/brainfs/brainfstest"
+)
+
+// hyperguild#157 slice 4: LoadInventory listed wiki/<type>/ with os.ReadDir
+// and opened each .md by path, so a symlinked page put the target's title and
+// aliases into the inventory (and the LLM prompts built from it), and a FIFO
+// hung it. RebuildIndex read first sentences the same way.
+func TestLoadInventoryRefusesSymlinksAndSurvivesSwapRaces(t *testing.T) {
+	brain := t.TempDir()
+	dir := filepath.Join(brain, "wiki", "concepts")
+	require.NoError(t, os.MkdirAll(dir, 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(dir, "ok.md"), []byte("---\ntitle: zqinside\n---\n"), 0o644))
+	require.NoError(t, os.Symlink(brainfstest.Outside(t), filepath.Join(dir, "leak.md")))
+	inBrain := brainfstest.WriteSentinelAt(t, filepath.Join(brain, "raw", "s.md"))
+	require.NoError(t, os.Symlink(filepath.Join("..", "..", "raw", "s.md"), filepath.Join(dir, "inlink.md")))
+
+	inv, err := LoadInventory(brain)
+	require.NoError(t, err)
+	got := fmt.Sprintf("%+v", inv)
+	assert.Contains(t, got, "zqinside", "positive control")
+	assert.NotContains(t, got, brainfstest.Sentinel)
+	assert.NotContains(t, got, "leak", "a symlinked page is not listed")
+	assert.NotContains(t, got, "inlink", "a page linked to another brain file is not listed")
+
+	p := filepath.Join(dir, "r.md")
+	read := func() string {
+		inv, _ := LoadInventory(brain)
+		return fmt.Sprintf("%+v", inv)
+	}
+	brainfstest.AssertNoLeak(t, p, "---\ntitle: zqinside\n---\n", 1500*time.Millisecond, read)
+	brainfstest.AssertNoLeakFrom(t, p, "---\ntitle: zqinside\n---\n", inBrain, 1500*time.Millisecond, read)
+	brainfstest.AssertNoHang(t, p, "---\ntitle: zqinside\n---\n", 1500*time.Millisecond, 6*time.Second, func() { _ = read() })
+}
+
+func TestLoadInventoryReturnsErrNotRegularForASymlinkedTypeDir(t *testing.T) {
+	brain := t.TempDir()
+	require.NoError(t, os.MkdirAll(filepath.Join(brain, "wiki"), 0o755))
+	require.NoError(t, os.MkdirAll(filepath.Join(brain, "raw"), 0o755))
+	require.NoError(t, os.WriteFile(filepath.Join(brain, "raw", "r.md"), []byte("---\ntitle: zqrawonly\n---\n"), 0o644))
+	require.NoError(t, os.Symlink(filepath.Join("..", "raw"), filepath.Join(brain, "wiki", "concepts")))
+	inv, err := LoadInventory(brain)
+	require.ErrorIs(t, err, brainfs.ErrNotRegular)
+	assert.NotContains(t, fmt.Sprintf("%+v", inv), "zqrawonly")
+}
+
+func TestRebuildIndexDoesNotReadAPageSwappedForASymlink(t *testing.T) {
+	brain := t.TempDir()
+	dir := filepath.Join(brain, "wiki", "concepts")
+	require.NoError(t, os.MkdirAll(dir, 0o755))
+	p := filepath.Join(dir, "r.md")
+	require.NoError(t, os.WriteFile(p, []byte("---\ntitle: R\n---\nzqinside sentence.\n"), 0o644))
+	require.NoError(t, RebuildIndex(brain, "2026-10-04"))
+	idx, err := os.ReadFile(filepath.Join(brain, "wiki", "index.md"))
+	require.NoError(t, err)
+	require.Contains(t, string(idx), "zqinside", "positive control: the summary is read")
+
+	read := func() string {
+		_ = RebuildIndex(brain, "2026-10-04")
+		b, _ := os.ReadFile(filepath.Join(brain, "wiki", "index.md"))
+		return string(b)
+	}
+	brainfstest.AssertNoLeak(t, p, "---\ntitle: R\n---\nzqinside sentence.\n", 1500*time.Millisecond, read)
+	inBrain := brainfstest.WriteSentinelAt(t, filepath.Join(brain, "raw", "s.md"))
+	brainfstest.AssertNoLeakFrom(t, p, "---\ntitle: R\n---\nzqinside sentence.\n", inBrain, 1500*time.Millisecond, read)
+	brainfstest.AssertNoHang(t, p, "---\ntitle: R\n---\nzqinside sentence.\n", 1500*time.Millisecond, 6*time.Second, func() { _ = read() })
+}